KEGG   PATHWAY: rcu00630
Entry
rcu00630                    Pathway                                
Name
Glyoxylate and dicarboxylate metabolism - Ricinus communis (castor bean)
Class
Metabolism; Carbohydrate metabolism
Pathway map
rcu00630  Glyoxylate and dicarboxylate metabolism
rcu00630

Module
rcu_M00012  Glyoxylate cycle [PATH:rcu00630]
rcu_M00532  Photorespiration [PATH:rcu00630]
rcu_M00621  Glycine cleavage system [PATH:rcu00630]
Other DBs
GO: 0046487 0043648
Organism
Ricinus communis (castor bean) [GN:rcu]
Gene
8264280  isocitrate lyase [KO:K01637] [EC:4.1.3.1 4.1.3.30]
8273050  acetyl-coenzyme A synthetase, chloroplastic/glyoxysomal isoform X1 [KO:K01895] [EC:6.2.1.1]
8258786  acetate--CoA ligase CCL3 [KO:K01913] [EC:6.2.1.1 6.2.1.2]
8258785  LOW QUALITY PROTEIN: acetate--CoA ligase CCL3 [KO:K01913] [EC:6.2.1.1 6.2.1.2]
8266340  malate synthase, glyoxysomal [KO:K01638] [EC:2.3.3.9]
8280438  malate dehydrogenase, cytoplasmic [KO:K00025] [EC:1.1.1.37]
8265829  malate dehydrogenase [KO:K00025] [EC:1.1.1.37]
8259206  malate dehydrogenase, mitochondrial [KO:K00026] [EC:1.1.1.37]
8287513  malate dehydrogenase, mitochondrial [KO:K00026] [EC:1.1.1.37]
8275944  malate dehydrogenase, glyoxysomal [KO:K00026] [EC:1.1.1.37]
8258689  malate dehydrogenase, glyoxysomal [KO:K00026] [EC:1.1.1.37]
8263423  malate dehydrogenase, chloroplastic [KO:K00026] [EC:1.1.1.37]
8268683  citrate synthase, glyoxysomal [KO:K01647] [EC:2.3.3.1]
8289310  citrate synthase, mitochondrial [KO:K01647] [EC:2.3.3.1]
8274835  aconitate hydratase, cytoplasmic [KO:K01681] [EC:4.2.1.3]
8267700  aconitate hydratase 1 [KO:K01681] [EC:4.2.1.3]
8279846  aconitate hydratase, cytoplasmic isoform X1 [KO:K01681] [EC:4.2.1.3]
8280756  probable acetyl-CoA acetyltransferase, cytosolic 2 isoform X3 [KO:K00626] [EC:2.3.1.9]
8289695  acetyl-CoA acetyltransferase, cytosolic 1 [KO:K00626] [EC:2.3.1.9]
8260438  peroxisomal (S)-2-hydroxyacid oxidase GLO4 [KO:K11517] [EC:1.1.3.15]
8260443  peroxisomal (S)-2-hydroxyacid oxidase GLO4 [KO:K11517] [EC:1.1.3.15]
8260444  peroxisomal (S)-2-hydroxyacid oxidase GLO4 [KO:K11517] [EC:1.1.3.15]
8264086  glycolate oxidase [KO:K11517] [EC:1.1.3.15]
8260439  peroxisomal (S)-2-hydroxyacid oxidase GLO4 isoform X1 [KO:K11517] [EC:1.1.3.15]
8268764  catalase isozyme 2 [KO:K03781] [EC:1.11.1.6]
107261240  catalase isozyme 2 [KO:K03781] [EC:1.11.1.6]
8273613  catalase isozyme 1-like isoform X1 [KO:K03781] [EC:1.11.1.6]
8272488  glyoxylate/hydroxypyruvate reductase HPR3 [KO:K15919] [EC:1.1.1.79 1.1.1.81]
8258477  glyoxylate/hydroxypyruvate reductase HPR3 [KO:K15919] [EC:1.1.1.79 1.1.1.81]
8258475  glyoxylate/hydroxypyruvate reductase HPR3 [KO:K15919] [EC:1.1.1.79 1.1.1.81]
8288307  glyoxylate/succinic semialdehyde reductase 1 [KO:K18121] [EC:1.1.1.79 1.1.1.-]
8284718  glyoxylate/succinic semialdehyde reductase 2, chloroplastic [KO:K18121] [EC:1.1.1.79 1.1.1.-]
8273576  glycerate dehydrogenase [KO:K15893] [EC:1.1.1.29]
8262021  phosphoglycolate phosphatase 2 [KO:K19269] [EC:3.1.3.18 3.1.3.48]
8274235  phosphoglycolate phosphatase 1A, chloroplastic [KO:K19269] [EC:3.1.3.18 3.1.3.48]
11542325  rbcL; ribulose-1,5-bisphosphate carboxylase/oxygenase large subunit [KO:K01601] [EC:4.1.1.39]
107261263  LOW QUALITY PROTEIN: ribulose bisphosphate carboxylase large chain [KO:K01601] [EC:4.1.1.39]
8272344  ribulose bisphosphate carboxylase small subunit, chloroplastic isoform X1 [KO:K01602] [EC:4.1.1.39]
8271820  ribulose bisphosphate carboxylase small subunit, chloroplastic [KO:K01602] [EC:4.1.1.39]
8285781  ribulose bisphosphate carboxylase small subunit, chloroplastic [KO:K01602] [EC:4.1.1.39]
8286122  serine--glyoxylate aminotransferase [KO:K00830] [EC:2.6.1.44 2.6.1.45 2.6.1.51]
8273496  glutamate--glyoxylate aminotransferase 2 [KO:K14272] [EC:2.6.1.4 2.6.1.2 2.6.1.44]
8270489  ferredoxin-dependent glutamate synthase, chloroplastic [KO:K00284] [EC:1.4.7.1]
8261490  glutamine synthetase leaf isozyme, chloroplastic [KO:K01915] [EC:6.3.1.2]
8281440  glutamine synthetase nodule isozyme isoform X1 [KO:K01915] [EC:6.3.1.2]
8262997  serine hydroxymethyltransferase 7 [KO:K00600] [EC:2.1.2.1]
8260084  serine hydroxymethyltransferase 7 [KO:K00600] [EC:2.1.2.1]
8284566  serine hydroxymethyltransferase 3, chloroplastic [KO:K00600] [EC:2.1.2.1]
8286891  serine hydroxymethyltransferase 4 [KO:K00600] [EC:2.1.2.1]
8270249  serine hydroxymethyltransferase, mitochondrial [KO:K00600] [EC:2.1.2.1]
8280329  serine hydroxymethyltransferase, mitochondrial [KO:K00600] [EC:2.1.2.1]
8275599  glycine dehydrogenase (decarboxylating), mitochondrial [KO:K00281] [EC:1.4.4.2]
8284173  aminomethyltransferase, mitochondrial [KO:K00605] [EC:2.1.2.10]
8258791  dihydrolipoyl dehydrogenase 1, chloroplastic isoform X2 [KO:K00382] [EC:1.8.1.4]
8261311  dihydrolipoyl dehydrogenase 1, mitochondrial [KO:K00382] [EC:1.8.1.4]
8284627  glycine cleavage system H protein, mitochondrial [KO:K02437]
8267572  glycine cleavage system H protein 2, mitochondrial [KO:K02437]
8271345  D-glycerate 3-kinase, chloroplastic [KO:K15918] [EC:2.7.1.31]
8269309  formate dehydrogenase, mitochondrial [KO:K00122] [EC:1.17.1.9]
8267721  formyltetrahydrofolate deformylase 1, mitochondrial [KO:K01433] [EC:3.5.1.10]
8283349  formamidase isoform X2 [KO:K01455] [EC:3.5.1.49]
8270012  probable CoA ligase CCL9 [KO:K22133] [EC:6.2.1.8]
8266454  probable CoA ligase CCL9 [KO:K22133] [EC:6.2.1.8]
Compound
C00007  Oxygen
C00011  CO2
C00014  Ammonia
C00022  Pyruvate
C00024  Acetyl-CoA
C00025  L-Glutamate
C00026  2-Oxoglutarate
C00027  Hydrogen peroxide
C00033  Acetate
C00036  Oxaloacetate
C00037  Glycine
C00042  Succinate
C00048  Glyoxylate
C00058  Formate
C00064  L-Glutamine
C00065  L-Serine
C00091  Succinyl-CoA
C00100  Propanoyl-CoA
C00111  Glycerone phosphate
C00136  Butanoyl-CoA
C00149  (S)-Malate
C00158  Citrate
C00160  Glycolate
C00168  Hydroxypyruvate
C00197  3-Phospho-D-glycerate
C00209  Oxalate
C00258  D-Glycerate
C00266  Glycolaldehyde
C00311  Isocitrate
C00313  Oxalyl-CoA
C00332  Acetoacetyl-CoA
C00417  cis-Aconitate
C00552  meso-Tartaric acid
C00631  2-Phospho-D-glycerate
C00683  (S)-Methylmalonyl-CoA
C00798  Formyl-CoA
C00877  Crotonoyl-CoA
C00888  Pentanoyl-CoA
C00898  (R,R)-Tartaric acid
C00975  Dihydroxyfumarate
C00988  2-Phosphoglycolate
C01127  4-Hydroxy-2-oxoglutarate
C01146  2-Hydroxy-3-oxopropanoate
C01182  D-Ribulose 1,5-bisphosphate
C01213  (R)-Methylmalonyl-CoA
C01380  Ethylene glycol
C01732  Mesaconate
C01989  3-Ethylmalate
C01990  3-Oxalomalate
C02123  3-Propylmalate
C02405  Formyl phosphate
C03217  2-Hydroxy-3-oxoadipate
C03459  2-Hydroxy-3-oxosuccinate
C03548  trans-2,3-Epoxysuccinate
C03561  (R)-3-Hydroxybutanoyl-CoA
C03618  L-threo-3-Methylaspartate
C04348  L-Malyl-CoA
C06027  L-erythro-3-Methylmalyl-CoA
C06028  2-Methylfumaryl-CoA
C06049  N-Formylderivatives
C18026  (2S)-Ethylmalonyl-CoA
C18324  (2S)-Methylsuccinyl-CoA
C20238  (2R)-Ethylmalonyl-CoA
C22337  D-Ribulose 1-phosphate
Reference
PMID:10978349
  Authors
Njau RK, Herndon CA, Hawes JW.
  Title
Novel beta-hydroxyacid dehydrogenases in Escherichia coli and Haemophilus influenzae.
  Journal
J Biol Chem 275:38780-6 (2000)
DOI:10.1074/jbc.M007432200
Reference
PMID:18065535
  Authors
Zarzycki J, Schlichting A, Strychalsky N, Muller M, Alber BE, Fuchs G
  Title
Mesaconyl-coenzyme A hydratase, a new enzyme of two central carbon metabolic pathways in bacteria.
  Journal
J Bacteriol 190:1366-74 (2008)
DOI:10.1128/JB.01621-07
Reference
PMID:18819910
  Authors
Erb TJ, Retey J, Fuchs G, Alber BE
  Title
Ethylmalonyl-CoA mutase from Rhodobacter sphaeroides defines a new subclade of coenzyme B12-dependent acyl-CoA mutases.
  Journal
J Biol Chem 283:32283-93 (2008)
DOI:10.1074/jbc.M805527200
Reference
PMID:9596633
  Authors
Coschigano KT, Melo-Oliveira R, Lim J, Coruzzi GM
  Title
Arabidopsis gls mutants and distinct Fd-GOGAT genes. Implications for photorespiration and primary nitrogen assimilation.
  Journal
Plant Cell 10:741-52 (1998)
DOI:10.1105/tpc.10.5.741
Reference
PMID:16407450
  Authors
Masclaux-Daubresse C, Reisdorf-Cren M, Pageau K, Lelandais M, Grandjean O, Kronenberger J, Valadier MH, Feraud M, Jouglet T, Suzuki A
  Title
Glutamine synthetase-glutamate synthase pathway and glutamate dehydrogenase play distinct roles in the sink-source nitrogen cycle in tobacco.
  Journal
Plant Physiol 140:444-56 (2006)
DOI:10.1104/pp.105.071910
Reference
PMID:21252347
  Authors
Khomyakova M, Bukmez O, Thomas LK, Erb TJ, Berg IA
  Title
A methylaspartate cycle in haloarchaea.
  Journal
Science 331:334-7 (2011)
DOI:10.1126/science.1196544
Reference
PMID:11513957
  Authors
Serrano JA, Bonete MJ
  Title
Sequencing, phylogenetic and transcriptional analysis of the glyoxylate bypass operon (ace) in the halophilic archaeon Haloferax volcanii.
  Journal
Biochim Biophys Acta 1520:154-62 (2001)
DOI:10.1016/S0167-4781(01)00263-9
Related
pathway
rcu00010  Glycolysis / Gluconeogenesis
rcu00020  Citrate cycle (TCA cycle)
rcu00030  Pentose phosphate pathway
rcu00053  Ascorbate and aldarate metabolism
rcu00071  Fatty acid degradation
rcu00230  Purine metabolism
rcu00250  Alanine, aspartate and glutamate metabolism
rcu00260  Glycine, serine and threonine metabolism
rcu00620  Pyruvate metabolism
rcu00710  Carbon fixation by Calvin cycle
rcu00750  Vitamin B6 metabolism
rcu00910  Nitrogen metabolism
KO pathway
ko00630   
LinkDB

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