KEGG   PATHWAY: rez00630
Entry
rez00630                    Pathway                                
Name
Glyoxylate and dicarboxylate metabolism - Rhizobium esperanzae
Class
Metabolism; Carbohydrate metabolism
Pathway map
rez00630  Glyoxylate and dicarboxylate metabolism
rez00630

Module
rez_M00012  Glyoxylate cycle [PATH:rez00630]
rez_M00621  Glycine cleavage system [PATH:rez00630]
rez_M00741  Propanoyl-CoA metabolism, propanoyl-CoA => succinyl-CoA [PATH:rez00630]
Other DBs
GO: 0046487 0043648
Organism
Rhizobium esperanzae [GN:rez]
Gene
AMJ99_CH00753  aceA; isocitrate lyase [KO:K01637] [EC:4.1.3.1]
AMJ99_CH04046  AMP-dependent synthetase/ligase protein [KO:K01895] [EC:6.2.1.1]
AMJ99_CH04396  acsA; acetyl-CoA synthetase [KO:K01895] [EC:6.2.1.1]
AMJ99_CH00053  glcB; malate synthase G [KO:K01638] [EC:2.3.3.9]
AMJ99_CH04170  mdh; malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
AMJ99_CH02312  citrate synthase protein [KO:K01647] [EC:2.3.3.1]
AMJ99_CH02313  citA; citrate synthase [KO:K01647] [EC:2.3.3.1]
AMJ99_CH02066  gltA; citrate synthase [KO:K01647] [EC:2.3.3.1]
AMJ99_CH04220  acnA; aconitate hydratase [KO:K01681] [EC:4.2.1.3]
AMJ99_PD00017  vraB; acetyl-CoA C-acetyltransferase VraB [KO:K00626] [EC:2.3.1.9]
AMJ99_CH04296  phbA; acetyl-CoA acetyltransferase [KO:K00626] [EC:2.3.1.9]
AMJ99_PA00086  acetyl-CoA acetyltransferase protein [KO:K00626] [EC:2.3.1.9]
AMJ99_CH00572  fadA; acetyl-CoA C-acetyltransferase [KO:K00626] [EC:2.3.1.9]
AMJ99_CH04297  phbB; acetoacetyl-CoA reductase [KO:K00023] [EC:1.1.1.36]
AMJ99_CH01728  methylmalonyl-CoA epimerase protein [KO:K05606] [EC:5.1.99.1]
AMJ99_CH02357  pccA; propionyl-CoA carboxylase subunit alpha [KO:K01965] [EC:6.4.1.3]
AMJ99_CH02363  pccB; propionyl-CoA carboxylase beta subunit [KO:K01966] [EC:6.4.1.3 2.1.3.15]
AMJ99_PD00256  bhbA; methylmalonyl-CoA mutase [KO:K01847] [EC:5.4.99.2]
AMJ99_CH00827  glcD; glycolate oxidase subunit GlcD [KO:K00104] [EC:1.1.99.14]
AMJ99_CH00828  glcE; glycolate oxidase FAD-binding subunit GlcE [KO:K11472] [EC:1.1.99.14]
AMJ99_CH00829  glcF; glycolate oxidase iron-sulfur subunit GlcF [KO:K11473] [EC:1.1.99.14]
AMJ99_CH00142  gyaR-1; glyoxylate reductase 1 [KO:K00015] [EC:1.1.1.26]
AMJ99_CH00185  ghrA-1; bifunctional glyoxylate/hydroxypyruvate reductase A 1 [KO:K12972] [EC:1.1.1.79 1.1.1.81]
AMJ99_PD00435  ghrA-2; bifunctional glyoxylate/hydroxypyruvate reductase A 2 [KO:K12972] [EC:1.1.1.79 1.1.1.81]
AMJ99_CH02366  phosphoglycolate phosphatase protein [KO:K01091] [EC:3.1.3.18]
AMJ99_CH02512  gph; phosphoglycolate phosphatase [KO:K01091] [EC:3.1.3.18]
AMJ99_CH00864  phosphoglycolate phosphatase protein [KO:K01091] [EC:3.1.3.18]
AMJ99_CH02232  glnA; glutamine synthetase [KO:K01915] [EC:6.3.1.2]
AMJ99_CH00745  glutamine synthetase GlnA protein [KO:K01915] [EC:6.3.1.2]
AMJ99_CH01432  glutamine synthetase GlnA protein [KO:K01915] [EC:6.3.1.2]
AMJ99_CH03054  glutamine synthetase GlnA protein [KO:K01915] [EC:6.3.1.2]
AMJ99_CH03310  glnII; glutamine synthetase 2 [KO:K01915] [EC:6.3.1.2]
AMJ99_CH01629  glyA; serine hydroxymethyltransferase [KO:K00600] [EC:2.1.2.1]
AMJ99_CH02375  gcvP; glycine dehydrogenase (decarboxylating) [KO:K00281] [EC:1.4.4.2]
AMJ99_CH02373  gcvT; glycine-cleavage system protein T [KO:K00605] [EC:2.1.2.10]
AMJ99_CH04160  dihydrolipoamide dehydrogenase protein [KO:K00382] [EC:1.8.1.4]
AMJ99_CH02079  lpdA; dihydrolipoamide dehydrogenase [KO:K00382] [EC:1.8.1.4]
AMJ99_PA00091  lpdV; dihydrolipoamide dehydrogenase [KO:K00382] [EC:1.8.1.4]
AMJ99_CH02374  gcvH; glycine-cleavage system protein H [KO:K02437]
AMJ99_CH03610  xylose isomerase domain-containing protein [KO:K01816] [EC:5.3.1.22]
AMJ99_PD00601  garR; 2-hydroxy-3-oxopropionate reductase [KO:K00042] [EC:1.1.1.60]
AMJ99_CH01917  ttuD; hydroxypyruvate reductase [KO:K11529] [EC:2.7.1.165]
AMJ99_PD00438  ttuC; trifunctional D-malate dehydrogenase/tartrate dehydrogenase/tartrate decarboxylase [KO:K07246] [EC:1.1.1.93 4.1.1.73 1.1.1.83]
AMJ99_CH03919  eda; bifunctional 2-keto-4-hydroxyglutarate aldolase/2-keto-3-deoxy-6-phosphogluconate aldolase [KO:K01625] [EC:4.1.2.14 4.1.3.42]
AMJ99_CH04132  FdsD family formate dehydrogenase delta subunit protein [KO:K00126] [EC:1.17.1.9]
AMJ99_CH04134  formate dehydrogenase alpha subunit protein [KO:K00123] [EC:1.17.1.9]
AMJ99_CH04135  formate dehydrogenase beta subunit protein [KO:K00124]
AMJ99_CH04136  formate dehydrogenase gamma subunit protein [KO:K00127]
AMJ99_CH00228  purU-1; formyltetrahydrofolate deformylase 1 [KO:K01433] [EC:3.5.1.10]
AMJ99_PC00425  purU-2; formyltetrahydrofolate deformylase 2 [KO:K01433] [EC:3.5.1.10]
AMJ99_PC00084  hutG; formiminoglutamase [KO:K01458] [EC:3.5.1.68]
Compound
C00007  Oxygen
C00011  CO2
C00014  Ammonia
C00022  Pyruvate
C00024  Acetyl-CoA
C00025  L-Glutamate
C00026  2-Oxoglutarate
C00027  Hydrogen peroxide
C00033  Acetate
C00036  Oxaloacetate
C00037  Glycine
C00042  Succinate
C00048  Glyoxylate
C00058  Formate
C00064  L-Glutamine
C00065  L-Serine
C00091  Succinyl-CoA
C00100  Propanoyl-CoA
C00111  Glycerone phosphate
C00136  Butanoyl-CoA
C00149  (S)-Malate
C00158  Citrate
C00160  Glycolate
C00168  Hydroxypyruvate
C00197  3-Phospho-D-glycerate
C00209  Oxalate
C00258  D-Glycerate
C00266  Glycolaldehyde
C00311  Isocitrate
C00313  Oxalyl-CoA
C00332  Acetoacetyl-CoA
C00417  cis-Aconitate
C00552  meso-Tartaric acid
C00631  2-Phospho-D-glycerate
C00683  (S)-Methylmalonyl-CoA
C00798  Formyl-CoA
C00877  Crotonoyl-CoA
C00888  Pentanoyl-CoA
C00898  (R,R)-Tartaric acid
C00975  Dihydroxyfumarate
C00988  2-Phosphoglycolate
C01127  4-Hydroxy-2-oxoglutarate
C01146  2-Hydroxy-3-oxopropanoate
C01182  D-Ribulose 1,5-bisphosphate
C01213  (R)-Methylmalonyl-CoA
C01380  Ethylene glycol
C01732  Mesaconate
C01989  3-Ethylmalate
C01990  3-Oxalomalate
C02123  3-Propylmalate
C02405  Formyl phosphate
C03217  2-Hydroxy-3-oxoadipate
C03459  2-Hydroxy-3-oxosuccinate
C03548  trans-2,3-Epoxysuccinate
C03561  (R)-3-Hydroxybutanoyl-CoA
C03618  L-threo-3-Methylaspartate
C04348  L-Malyl-CoA
C06027  L-erythro-3-Methylmalyl-CoA
C06028  2-Methylfumaryl-CoA
C06049  N-Formylderivatives
C18026  (2S)-Ethylmalonyl-CoA
C18324  (2S)-Methylsuccinyl-CoA
C20238  (2R)-Ethylmalonyl-CoA
C22337  D-Ribulose 1-phosphate
Reference
PMID:10978349
  Authors
Njau RK, Herndon CA, Hawes JW.
  Title
Novel beta-hydroxyacid dehydrogenases in Escherichia coli and Haemophilus influenzae.
  Journal
J Biol Chem 275:38780-6 (2000)
DOI:10.1074/jbc.M007432200
Reference
PMID:18065535
  Authors
Zarzycki J, Schlichting A, Strychalsky N, Muller M, Alber BE, Fuchs G
  Title
Mesaconyl-coenzyme A hydratase, a new enzyme of two central carbon metabolic pathways in bacteria.
  Journal
J Bacteriol 190:1366-74 (2008)
DOI:10.1128/JB.01621-07
Reference
PMID:18819910
  Authors
Erb TJ, Retey J, Fuchs G, Alber BE
  Title
Ethylmalonyl-CoA mutase from Rhodobacter sphaeroides defines a new subclade of coenzyme B12-dependent acyl-CoA mutases.
  Journal
J Biol Chem 283:32283-93 (2008)
DOI:10.1074/jbc.M805527200
Reference
PMID:9596633
  Authors
Coschigano KT, Melo-Oliveira R, Lim J, Coruzzi GM
  Title
Arabidopsis gls mutants and distinct Fd-GOGAT genes. Implications for photorespiration and primary nitrogen assimilation.
  Journal
Plant Cell 10:741-52 (1998)
DOI:10.1105/tpc.10.5.741
Reference
PMID:16407450
  Authors
Masclaux-Daubresse C, Reisdorf-Cren M, Pageau K, Lelandais M, Grandjean O, Kronenberger J, Valadier MH, Feraud M, Jouglet T, Suzuki A
  Title
Glutamine synthetase-glutamate synthase pathway and glutamate dehydrogenase play distinct roles in the sink-source nitrogen cycle in tobacco.
  Journal
Plant Physiol 140:444-56 (2006)
DOI:10.1104/pp.105.071910
Reference
PMID:21252347
  Authors
Khomyakova M, Bukmez O, Thomas LK, Erb TJ, Berg IA
  Title
A methylaspartate cycle in haloarchaea.
  Journal
Science 331:334-7 (2011)
DOI:10.1126/science.1196544
Reference
PMID:11513957
  Authors
Serrano JA, Bonete MJ
  Title
Sequencing, phylogenetic and transcriptional analysis of the glyoxylate bypass operon (ace) in the halophilic archaeon Haloferax volcanii.
  Journal
Biochim Biophys Acta 1520:154-62 (2001)
DOI:10.1016/S0167-4781(01)00263-9
Related
pathway
rez00010  Glycolysis / Gluconeogenesis
rez00020  Citrate cycle (TCA cycle)
rez00030  Pentose phosphate pathway
rez00053  Ascorbate and aldarate metabolism
rez00071  Fatty acid degradation
rez00230  Purine metabolism
rez00250  Alanine, aspartate and glutamate metabolism
rez00260  Glycine, serine and threonine metabolism
rez00620  Pyruvate metabolism
rez00710  Carbon fixation by Calvin cycle
rez00750  Vitamin B6 metabolism
rez00910  Nitrogen metabolism
KO pathway
ko00630   
LinkDB

DBGET integrated database retrieval system