KEGG   PATHWAY: rhid00630
Entry
rhid00630                   Pathway                                
Name
Glyoxylate and dicarboxylate metabolism - Rhizobium hidalgonense
Class
Metabolism; Carbohydrate metabolism
Pathway map
rhid00630  Glyoxylate and dicarboxylate metabolism
rhid00630

Module
rhid_M00012  Glyoxylate cycle [PATH:rhid00630]
rhid_M00621  Glycine cleavage system [PATH:rhid00630]
rhid_M00741  Propanoyl-CoA metabolism, propanoyl-CoA => succinyl-CoA [PATH:rhid00630]
Other DBs
GO: 0046487 0043648
Organism
Rhizobium hidalgonense [GN:rhid]
Gene
FFM81_017360  aceA; isocitrate lyase [KO:K01637] [EC:4.1.3.1 4.1.3.30]
FFM81_021205  acs; acetate--CoA ligase [KO:K01895] [EC:6.2.1.1]
FFM81_002045  AMP-binding protein [KO:K01895] [EC:6.2.1.1]
FFM81_025560  acs; acetate--CoA ligase [KO:K01895] [EC:6.2.1.1]
FFM81_032215  acs; acetate--CoA ligase [KO:K01895] [EC:6.2.1.1]
FFM81_020865  malate synthase G [KO:K01638] [EC:2.3.3.9]
FFM81_001285  mdh; malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
FFM81_010440  citrate synthase/methylcitrate synthase [KO:K01647] [EC:2.3.3.1]
FFM81_010445  citrate synthase [KO:K01647] [EC:2.3.3.1]
FFM81_011385  gltA; citrate (Si)-synthase [KO:K01647] [EC:2.3.3.1]
FFM81_000950  acnA; aconitate hydratase AcnA [KO:K27802] [EC:4.2.1.3 4.2.1.99]
FFM81_022675  acetyl-CoA C-acyltransferase [KO:K00626] [EC:2.3.1.9]
FFM81_021690  thiolase family protein [KO:K00626] [EC:2.3.1.9]
FFM81_018185  acetyl-CoA C-acetyltransferase [KO:K00626] [EC:2.3.1.9]
FFM81_000480  acetyl-CoA C-acetyltransferase [KO:K00626] [EC:2.3.1.9]
FFM81_000485  beta-ketoacyl-ACP reductase [KO:K00023] [EC:1.1.1.36]
FFM81_013020  mce; methylmalonyl-CoA epimerase [KO:K05606] [EC:5.1.99.1]
FFM81_010220  acetyl/propionyl/methylcrotonyl-CoA carboxylase subunit alpha [KO:K01965] [EC:6.4.1.3]
FFM81_010190  acyl-CoA carboxylase subunit beta [KO:K01966] [EC:6.4.1.3 2.1.3.15]
FFM81_028680  scpA; methylmalonyl-CoA mutase [KO:K01847] [EC:5.4.99.2]
FFM81_016960  FAD-binding protein [KO:K00104] [EC:1.1.99.14]
FFM81_016955  glcE; glycolate oxidase subunit GlcE [KO:K11472] [EC:1.1.99.14]
FFM81_016950  glcF; glycolate oxidase subunit GlcF [KO:K11473] [EC:1.1.99.14]
FFM81_012050  catalase [KO:K03781] [EC:1.11.1.6]
FFM81_020400  D-glycerate dehydrogenase [KO:K00015] [EC:1.1.1.26]
FFM81_022595  glyoxylate/hydroxypyruvate reductase A [KO:K12972] [EC:1.1.1.79 1.1.1.81]
FFM81_020190  glyoxylate/hydroxypyruvate reductase A [KO:K12972] [EC:1.1.1.79 1.1.1.81]
FFM81_025805  glyoxylate/hydroxypyruvate reductase A [KO:K12972] [EC:1.1.1.79 1.1.1.81]
FFM81_016785  HAD family hydrolase [KO:K01091] [EC:3.1.3.18]
FFM81_009405  phosphoglycolate phosphatase [KO:K01091] [EC:3.1.3.18]
FFM81_010175  HAD-IA family hydrolase [KO:K01091] [EC:3.1.3.18]
FFM81_017400  glutamine synthetase [KO:K01915] [EC:6.3.1.2]
FFM81_005635  glutamine synthetase beta-grasp domain-containing protein [KO:K01915] [EC:6.3.1.2]
FFM81_006715  glutamine synthetase [KO:K01915] [EC:6.3.1.2]
FFM81_010850  glnA; type I glutamate--ammonia ligase [KO:K01915] [EC:6.3.1.2]
FFM81_014455  glutamine synthetase [KO:K01915] [EC:6.3.1.2]
FFM81_029950  glnT; type III glutamate--ammonia ligase [KO:K01915] [EC:6.3.1.2]
FFM81_013550  serine hydroxymethyltransferase [KO:K00600] [EC:2.1.2.1]
FFM81_010135  gcvP; aminomethyl-transferring glycine dehydrogenase [KO:K00281] [EC:1.4.4.2]
FFM81_010145  gcvT; glycine cleavage system aminomethyltransferase GcvT [KO:K00605] [EC:2.1.2.10]
FFM81_027460  aminomethyl transferase family protein [KO:K00605] [EC:2.1.2.10]
FFM81_029880  DUF1989 domain-containing protein [KO:K00605] [EC:2.1.2.10]
FFM81_029940  aminomethyl transferase family protein [KO:K00605] [EC:2.1.2.10]
FFM81_022650  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
FFM81_001340  dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
FFM81_011325  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
FFM81_010140  gcvH; glycine cleavage system protein GcvH [KO:K02437]
FFM81_004265  TIM barrel protein [KO:K01816] [EC:5.3.1.22]
FFM81_027020  TIM barrel protein [KO:K01816] [EC:5.3.1.22]
FFM81_022370  NAD(P)-dependent oxidoreductase [KO:K00042] [EC:1.1.1.60]
FFM81_004360  NAD(P)-dependent oxidoreductase [KO:K00042] [EC:1.1.1.60]
FFM81_012075  glycerate kinase [KO:K11529] [EC:2.7.1.165]
FFM81_021660  tartrate dehydrogenase [KO:K07246] [EC:1.1.1.93 4.1.1.73 1.1.1.83]
FFM81_024250  tartrate dehydrogenase [KO:K07246] [EC:1.1.1.93 4.1.1.73 1.1.1.83]
FFM81_002785  2-dehydro-3-deoxy-phosphogluconate aldolase [KO:K01625] [EC:4.1.2.14 4.1.3.42]
FFM81_001535  formate dehydrogenase subunit delta [KO:K00126] [EC:1.17.1.9]
FFM81_001525  fdhF; formate dehydrogenase subunit alpha [KO:K00123] [EC:1.17.1.9]
FFM81_001520  NADH-quinone oxidoreductase subunit NuoF [KO:K00124]
FFM81_001515  formate dehydrogenase subunit gamma [KO:K00127]
FFM81_024315  alpha/beta hydrolase [KO:K01432] [EC:3.5.1.9]
FFM81_019970  purU; formyltetrahydrofolate deformylase [KO:K01433] [EC:3.5.1.10]
FFM81_026995  purU; formyltetrahydrofolate deformylase [KO:K01433] [EC:3.5.1.10]
FFM81_027445  purU; formyltetrahydrofolate deformylase [KO:K01433] [EC:3.5.1.10]
FFM81_029945  purU; formyltetrahydrofolate deformylase [KO:K01433] [EC:3.5.1.10]
FFM81_030885  hutG; N-formylglutamate deformylase [KO:K01458] [EC:3.5.1.68]
Compound
C00007  Oxygen
C00011  CO2
C00014  Ammonia
C00022  Pyruvate
C00024  Acetyl-CoA
C00025  L-Glutamate
C00026  2-Oxoglutarate
C00027  Hydrogen peroxide
C00033  Acetate
C00036  Oxaloacetate
C00037  Glycine
C00042  Succinate
C00048  Glyoxylate
C00058  Formate
C00064  L-Glutamine
C00065  L-Serine
C00091  Succinyl-CoA
C00100  Propanoyl-CoA
C00111  Glycerone phosphate
C00136  Butanoyl-CoA
C00149  (S)-Malate
C00158  Citrate
C00160  Glycolate
C00168  Hydroxypyruvate
C00197  3-Phospho-D-glycerate
C00209  Oxalate
C00258  D-Glycerate
C00266  Glycolaldehyde
C00311  Isocitrate
C00313  Oxalyl-CoA
C00332  Acetoacetyl-CoA
C00417  cis-Aconitate
C00552  meso-Tartaric acid
C00631  2-Phospho-D-glycerate
C00683  (S)-Methylmalonyl-CoA
C00798  Formyl-CoA
C00877  Crotonoyl-CoA
C00888  Pentanoyl-CoA
C00898  (R,R)-Tartaric acid
C00975  Dihydroxyfumarate
C00988  2-Phosphoglycolate
C01127  4-Hydroxy-2-oxoglutarate
C01146  2-Hydroxy-3-oxopropanoate
C01182  D-Ribulose 1,5-bisphosphate
C01213  (R)-Methylmalonyl-CoA
C01380  Ethylene glycol
C01732  Mesaconate
C01989  3-Ethylmalate
C01990  3-Oxalomalate
C02123  3-Propylmalate
C02405  Formyl phosphate
C03217  2-Hydroxy-3-oxoadipate
C03459  2-Hydroxy-3-oxosuccinate
C03548  trans-2,3-Epoxysuccinate
C03561  (R)-3-Hydroxybutanoyl-CoA
C03618  L-threo-3-Methylaspartate
C04348  L-Malyl-CoA
C06027  L-erythro-3-Methylmalyl-CoA
C06028  2-Methylfumaryl-CoA
C06049  N-Formylderivatives
C18026  (2S)-Ethylmalonyl-CoA
C18324  (2S)-Methylsuccinyl-CoA
C20238  (2R)-Ethylmalonyl-CoA
C22337  D-Ribulose 1-phosphate
Reference
PMID:10978349
  Authors
Njau RK, Herndon CA, Hawes JW.
  Title
Novel beta-hydroxyacid dehydrogenases in Escherichia coli and Haemophilus influenzae.
  Journal
J Biol Chem 275:38780-6 (2000)
DOI:10.1074/jbc.M007432200
Reference
PMID:18065535
  Authors
Zarzycki J, Schlichting A, Strychalsky N, Muller M, Alber BE, Fuchs G
  Title
Mesaconyl-coenzyme A hydratase, a new enzyme of two central carbon metabolic pathways in bacteria.
  Journal
J Bacteriol 190:1366-74 (2008)
DOI:10.1128/JB.01621-07
Reference
PMID:18819910
  Authors
Erb TJ, Retey J, Fuchs G, Alber BE
  Title
Ethylmalonyl-CoA mutase from Rhodobacter sphaeroides defines a new subclade of coenzyme B12-dependent acyl-CoA mutases.
  Journal
J Biol Chem 283:32283-93 (2008)
DOI:10.1074/jbc.M805527200
Reference
PMID:9596633
  Authors
Coschigano KT, Melo-Oliveira R, Lim J, Coruzzi GM
  Title
Arabidopsis gls mutants and distinct Fd-GOGAT genes. Implications for photorespiration and primary nitrogen assimilation.
  Journal
Plant Cell 10:741-52 (1998)
DOI:10.1105/tpc.10.5.741
Reference
PMID:16407450
  Authors
Masclaux-Daubresse C, Reisdorf-Cren M, Pageau K, Lelandais M, Grandjean O, Kronenberger J, Valadier MH, Feraud M, Jouglet T, Suzuki A
  Title
Glutamine synthetase-glutamate synthase pathway and glutamate dehydrogenase play distinct roles in the sink-source nitrogen cycle in tobacco.
  Journal
Plant Physiol 140:444-56 (2006)
DOI:10.1104/pp.105.071910
Reference
PMID:21252347
  Authors
Khomyakova M, Bukmez O, Thomas LK, Erb TJ, Berg IA
  Title
A methylaspartate cycle in haloarchaea.
  Journal
Science 331:334-7 (2011)
DOI:10.1126/science.1196544
Reference
PMID:11513957
  Authors
Serrano JA, Bonete MJ
  Title
Sequencing, phylogenetic and transcriptional analysis of the glyoxylate bypass operon (ace) in the halophilic archaeon Haloferax volcanii.
  Journal
Biochim Biophys Acta 1520:154-62 (2001)
DOI:10.1016/S0167-4781(01)00263-9
Related
pathway
rhid00010  Glycolysis / Gluconeogenesis
rhid00020  Citrate cycle (TCA cycle)
rhid00030  Pentose phosphate pathway
rhid00053  Ascorbate and aldarate metabolism
rhid00071  Fatty acid degradation
rhid00230  Purine metabolism
rhid00250  Alanine, aspartate and glutamate metabolism
rhid00260  Glycine, serine and threonine metabolism
rhid00620  Pyruvate metabolism
rhid00710  Carbon fixation by Calvin cycle
rhid00750  Vitamin B6 metabolism
rhid00910  Nitrogen metabolism
KO pathway
ko00630   
LinkDB

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