KEGG   PATHWAY: rjg00630
Entry
rjg00630                    Pathway                                
Name
Glyoxylate and dicarboxylate metabolism - Rhizobium jaguaris
Class
Metabolism; Carbohydrate metabolism
Pathway map
rjg00630  Glyoxylate and dicarboxylate metabolism
rjg00630

Module
rjg_M00012  Glyoxylate cycle [PATH:rjg00630]
rjg_M00621  Glycine cleavage system [PATH:rjg00630]
rjg_M00741  Propanoyl-CoA metabolism, propanoyl-CoA => succinyl-CoA [PATH:rjg00630]
Other DBs
GO: 0046487 0043648
Organism
Rhizobium jaguaris [GN:rjg]
Gene
CCGE525_24385  isocitrate lyase [KO:K01637] [EC:4.1.3.1]
CCGE525_19190  AMP-dependent synthetase [KO:K01895] [EC:6.2.1.1]
CCGE525_22080  acs; acetate--CoA ligase [KO:K01895] [EC:6.2.1.1]
CCGE525_34295  acs; acetate--CoA ligase [KO:K01895] [EC:6.2.1.1]
CCGE525_00285  malate synthase G [KO:K01638] [EC:2.3.3.9]
CCGE525_19835  mdh; malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
CCGE525_10600  citrate synthase [KO:K01647] [EC:2.3.3.1]
CCGE525_10605  citrate synthase/methylcitrate synthase [KO:K01647] [EC:2.3.3.1]
CCGE525_09830  gltA; citrate (Si)-synthase [KO:K01647] [EC:2.3.3.1]
CCGE525_20080  acnA; aconitate hydratase AcnA [KO:K01681] [EC:4.2.1.3]
CCGE525_21410  acetyl-CoA C-acetyltransferase [KO:K00626] [EC:2.3.1.9]
CCGE525_20715  acetyl-CoA C-acyltransferase [KO:K00626] [EC:2.3.1.9]
CCGE525_03895  acetyl-CoA C-acetyltransferase [KO:K00626] [EC:2.3.1.9]
CCGE525_21405  phbB; acetoacetyl-CoA reductase [KO:K00023] [EC:1.1.1.36]
CCGE525_08220  mce; methylmalonyl-CoA epimerase [KO:K05606] [EC:5.1.99.1]
CCGE525_10875  acetyl/propionyl/methylcrotonyl-CoA carboxylase subunit alpha [KO:K01965] [EC:6.4.1.3]
CCGE525_10915  acyl-CoA carboxylase subunit beta [KO:K01966] [EC:6.4.1.3 2.1.3.15]
CCGE525_06230  methylmalonyl-CoA mutase [KO:K01847] [EC:5.4.99.2]
CCGE525_06235  methylmalonyl-CoA mutase [KO:K01847] [EC:5.4.99.2]
CCGE525_04790  FAD-binding protein [KO:K00104] [EC:1.1.99.14]
CCGE525_04795  FAD-binding protein [KO:K11472] [EC:1.1.99.14]
CCGE525_04800  glycolate oxidase iron-sulfur subunit [KO:K11473] [EC:1.1.99.14]
CCGE525_00720  D-glycerate dehydrogenase [KO:K00015] [EC:1.1.1.26]
CCGE525_28105  glyoxylate/hydroxypyruvate reductase A [KO:K12972] [EC:1.1.1.79 1.1.1.81]
CCGE525_01390  glyoxylate/hydroxypyruvate reductase A [KO:K12972] [EC:1.1.1.79 1.1.1.81]
CCGE525_05010  HAD family hydrolase [KO:K01091] [EC:3.1.3.18]
CCGE525_10930  HAD family hydrolase [KO:K01091] [EC:3.1.3.18]
CCGE525_11580  phosphoglycolate phosphatase [KO:K01091] [EC:3.1.3.18]
CCGE525_04385  glutamine synthetase [KO:K01915] [EC:6.3.1.2]
CCGE525_13090  glutamine synthetase [KO:K01915] [EC:6.3.1.2]
CCGE525_10225  glnA; type I glutamate--ammonia ligase [KO:K01915] [EC:6.3.1.2]
CCGE525_06830  glutamine synthetase [KO:K01915] [EC:6.3.1.2]
CCGE525_03825  glutamine synthetase [KO:K01915] [EC:6.3.1.2]
CCGE525_07700  serine hydroxymethyltransferase [KO:K00600] [EC:2.1.2.1]
CCGE525_10955  gcvP; glycine dehydrogenase (aminomethyl-transferring) [KO:K00281] [EC:1.4.4.2]
CCGE525_10945  gcvT; glycine cleavage system aminomethyltransferase GcvT [KO:K00605] [EC:2.1.2.10]
CCGE525_22860  aminomethyl transferase family protein [KO:K00605] [EC:2.1.2.10]
CCGE525_22890  DUF1989 domain-containing protein [KO:K00605] [EC:2.1.2.10]
CCGE525_09895  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
CCGE525_19785  dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
CCGE525_10950  gcvH; glycine cleavage system protein GcvH [KO:K02437]
CCGE525_00425  hydroxypyruvate isomerase [KO:K01816] [EC:5.3.1.22]
CCGE525_37685  hydroxypyruvate isomerase [KO:K01816] [EC:5.3.1.22]
CCGE525_21010  hyi; hydroxypyruvate isomerase [KO:K01816] [EC:5.3.1.22]
CCGE525_16290  NAD(P)-dependent oxidoreductase [KO:K00042] [EC:1.1.1.60]
CCGE525_37945  DUF4147 domain-containing protein [KO:K11529] [EC:2.7.1.165]
CCGE525_16555  glycerate kinase [KO:K11529] [EC:2.7.1.165]
CCGE525_30470  tartrate dehydrogenase [KO:K07246] [EC:1.1.1.93 4.1.1.73 1.1.1.83]
CCGE525_28090  tartrate dehydrogenase [KO:K07246] [EC:1.1.1.93 4.1.1.73 1.1.1.83]
CCGE525_18005  2-dehydro-3-deoxy-phosphogluconate aldolase [KO:K01625] [EC:4.1.2.14 4.1.3.42]
CCGE525_19580  formate dehydrogenase [KO:K00126] [EC:1.17.1.9]
CCGE525_19595  formate dehydrogenase subunit alpha [KO:K00123] [EC:1.17.1.9]
CCGE525_19600  NADH-quinone oxidoreductase subunit NuoF [KO:K00124]
CCGE525_19605  formate dehydrogenase subunit gamma [KO:K00127]
CCGE525_30710  alpha/beta hydrolase [KO:K01432] [EC:3.5.1.9]
CCGE525_01705  purU; formyltetrahydrofolate deformylase [KO:K01433] [EC:3.5.1.10]
CCGE525_36000  purU; formyltetrahydrofolate deformylase [KO:K01433] [EC:3.5.1.10]
CCGE525_22850  purU; formyltetrahydrofolate deformylase [KO:K01433] [EC:3.5.1.10]
Compound
C00007  Oxygen
C00011  CO2
C00014  Ammonia
C00022  Pyruvate
C00024  Acetyl-CoA
C00025  L-Glutamate
C00026  2-Oxoglutarate
C00027  Hydrogen peroxide
C00033  Acetate
C00036  Oxaloacetate
C00037  Glycine
C00042  Succinate
C00048  Glyoxylate
C00058  Formate
C00064  L-Glutamine
C00065  L-Serine
C00091  Succinyl-CoA
C00100  Propanoyl-CoA
C00111  Glycerone phosphate
C00136  Butanoyl-CoA
C00149  (S)-Malate
C00158  Citrate
C00160  Glycolate
C00168  Hydroxypyruvate
C00197  3-Phospho-D-glycerate
C00209  Oxalate
C00258  D-Glycerate
C00266  Glycolaldehyde
C00311  Isocitrate
C00313  Oxalyl-CoA
C00332  Acetoacetyl-CoA
C00417  cis-Aconitate
C00552  meso-Tartaric acid
C00631  2-Phospho-D-glycerate
C00683  (S)-Methylmalonyl-CoA
C00798  Formyl-CoA
C00877  Crotonoyl-CoA
C00888  Pentanoyl-CoA
C00898  (R,R)-Tartaric acid
C00975  Dihydroxyfumarate
C00988  2-Phosphoglycolate
C01127  4-Hydroxy-2-oxoglutarate
C01146  2-Hydroxy-3-oxopropanoate
C01182  D-Ribulose 1,5-bisphosphate
C01213  (R)-Methylmalonyl-CoA
C01380  Ethylene glycol
C01732  Mesaconate
C01989  3-Ethylmalate
C01990  3-Oxalomalate
C02123  3-Propylmalate
C02405  Formyl phosphate
C03217  2-Hydroxy-3-oxoadipate
C03459  2-Hydroxy-3-oxosuccinate
C03548  trans-2,3-Epoxysuccinate
C03561  (R)-3-Hydroxybutanoyl-CoA
C03618  L-threo-3-Methylaspartate
C04348  L-Malyl-CoA
C06027  L-erythro-3-Methylmalyl-CoA
C06028  2-Methylfumaryl-CoA
C06049  N-Formylderivatives
C18026  (2S)-Ethylmalonyl-CoA
C18324  (2S)-Methylsuccinyl-CoA
C20238  (2R)-Ethylmalonyl-CoA
C22337  D-Ribulose 1-phosphate
Reference
PMID:10978349
  Authors
Njau RK, Herndon CA, Hawes JW.
  Title
Novel beta-hydroxyacid dehydrogenases in Escherichia coli and Haemophilus influenzae.
  Journal
J Biol Chem 275:38780-6 (2000)
DOI:10.1074/jbc.M007432200
Reference
PMID:18065535
  Authors
Zarzycki J, Schlichting A, Strychalsky N, Muller M, Alber BE, Fuchs G
  Title
Mesaconyl-coenzyme A hydratase, a new enzyme of two central carbon metabolic pathways in bacteria.
  Journal
J Bacteriol 190:1366-74 (2008)
DOI:10.1128/JB.01621-07
Reference
PMID:18819910
  Authors
Erb TJ, Retey J, Fuchs G, Alber BE
  Title
Ethylmalonyl-CoA mutase from Rhodobacter sphaeroides defines a new subclade of coenzyme B12-dependent acyl-CoA mutases.
  Journal
J Biol Chem 283:32283-93 (2008)
DOI:10.1074/jbc.M805527200
Reference
PMID:9596633
  Authors
Coschigano KT, Melo-Oliveira R, Lim J, Coruzzi GM
  Title
Arabidopsis gls mutants and distinct Fd-GOGAT genes. Implications for photorespiration and primary nitrogen assimilation.
  Journal
Plant Cell 10:741-52 (1998)
DOI:10.1105/tpc.10.5.741
Reference
PMID:16407450
  Authors
Masclaux-Daubresse C, Reisdorf-Cren M, Pageau K, Lelandais M, Grandjean O, Kronenberger J, Valadier MH, Feraud M, Jouglet T, Suzuki A
  Title
Glutamine synthetase-glutamate synthase pathway and glutamate dehydrogenase play distinct roles in the sink-source nitrogen cycle in tobacco.
  Journal
Plant Physiol 140:444-56 (2006)
DOI:10.1104/pp.105.071910
Reference
PMID:21252347
  Authors
Khomyakova M, Bukmez O, Thomas LK, Erb TJ, Berg IA
  Title
A methylaspartate cycle in haloarchaea.
  Journal
Science 331:334-7 (2011)
DOI:10.1126/science.1196544
Reference
PMID:11513957
  Authors
Serrano JA, Bonete MJ
  Title
Sequencing, phylogenetic and transcriptional analysis of the glyoxylate bypass operon (ace) in the halophilic archaeon Haloferax volcanii.
  Journal
Biochim Biophys Acta 1520:154-62 (2001)
DOI:10.1016/S0167-4781(01)00263-9
Related
pathway
rjg00010  Glycolysis / Gluconeogenesis
rjg00020  Citrate cycle (TCA cycle)
rjg00030  Pentose phosphate pathway
rjg00053  Ascorbate and aldarate metabolism
rjg00071  Fatty acid degradation
rjg00230  Purine metabolism
rjg00250  Alanine, aspartate and glutamate metabolism
rjg00260  Glycine, serine and threonine metabolism
rjg00620  Pyruvate metabolism
rjg00710  Carbon fixation by Calvin cycle
rjg00750  Vitamin B6 metabolism
rjg00910  Nitrogen metabolism
KO pathway
ko00630   
LinkDB

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