KEGG   PATHWAY: rln00630
Entry
rln00630                    Pathway                                
Name
Glyoxylate and dicarboxylate metabolism - Rhizobium lentis
Class
Metabolism; Carbohydrate metabolism
Pathway map
rln00630  Glyoxylate and dicarboxylate metabolism
rln00630

Module
rln_M00012  Glyoxylate cycle [PATH:rln00630]
rln_M00621  Glycine cleavage system [PATH:rln00630]
rln_M00741  Propanoyl-CoA metabolism, propanoyl-CoA => succinyl-CoA [PATH:rln00630]
Other DBs
GO: 0046487 0043648
Organism
Rhizobium lentis [GN:rln]
Gene
J0663_12370  aceA; isocitrate lyase [KO:K01637] [EC:4.1.3.1]
J0663_06795  AMP-binding protein [KO:K01895] [EC:6.2.1.1]
J0663_08585  acs; acetate--CoA ligase [KO:K01895] [EC:6.2.1.1]
J0663_30705  acs; acetate--CoA ligase [KO:K01895] [EC:6.2.1.1]
J0663_08925  malate synthase G [KO:K01638] [EC:2.3.3.9]
J0663_07425  mdh; malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
J0663_19030  gltA; citrate (Si)-synthase [KO:K01647] [EC:2.3.3.1]
J0663_20360  citrate synthase [KO:K01647] [EC:2.3.3.1]
J0663_20365  citrate synthase/methylcitrate synthase [KO:K01647] [EC:2.3.3.1]
J0663_07670  acnA; aconitate hydratase AcnA [KO:K01681] [EC:4.2.1.3]
J0663_08100  acetyl-CoA C-acetyltransferase [KO:K00626] [EC:2.3.1.9]
J0663_11540  acetyl-CoA C-acetyltransferase [KO:K00626] [EC:2.3.1.9]
J0663_25050  thiolase family protein [KO:K00626] [EC:2.3.1.9]
J0663_28595  acetyl-CoA C-acyltransferase [KO:K00626] [EC:2.3.1.9]
J0663_08105  beta-ketoacyl-ACP reductase [KO:K00023] [EC:1.1.1.36]
J0663_17025  mce; methylmalonyl-CoA epimerase [KO:K05606] [EC:5.1.99.1]
J0663_20610  acetyl/propionyl/methylcrotonyl-CoA carboxylase subunit alpha [KO:K01965] [EC:6.4.1.3]
J0663_20635  acyl-CoA carboxylase subunit beta [KO:K01966] [EC:6.4.1.3 2.1.3.15]
J0663_22740  scpA; methylmalonyl-CoA mutase [KO:K01847] [EC:5.4.99.2]
J0663_12740  FAD-binding protein [KO:K00104] [EC:1.1.99.14]
J0663_12745  FAD-binding protein [KO:K11472] [EC:1.1.99.14]
J0663_12750  glcF; glycolate oxidase subunit GlcF [KO:K11473] [EC:1.1.99.14]
J0663_09380  D-glycerate dehydrogenase [KO:K00015] [EC:1.1.1.26]
J0663_09580  glyoxylate/hydroxypyruvate reductase A [KO:K12972] [EC:1.1.1.79 1.1.1.81]
J0663_23540  glyoxylate/hydroxypyruvate reductase A [KO:K12972] [EC:1.1.1.79 1.1.1.81]
J0663_14090  D-2-hydroxyacid dehydrogenase [KO:K00018] [EC:1.1.1.29]
J0663_12930  HAD family hydrolase [KO:K01091] [EC:3.1.3.18]
J0663_20650  HAD-IA family hydrolase [KO:K01091] [EC:3.1.3.18]
J0663_21500  phosphoglycolate phosphatase [KO:K01091] [EC:3.1.3.18]
J0663_01965  glutamine synthetase [KO:K01915] [EC:6.3.1.2]
J0663_03030  glutamine synthetase beta-grasp domain-containing protein [KO:K01915] [EC:6.3.1.2]
J0663_12330  glutamine synthetase [KO:K01915] [EC:6.3.1.2]
J0663_15400  glutamine synthetase [KO:K01915] [EC:6.3.1.2]
J0663_19915  glnA; type I glutamate--ammonia ligase [KO:K01915] [EC:6.3.1.2]
J0663_26870  glnT; type III glutamate--ammonia ligase [KO:K01915] [EC:6.3.1.2]
J0663_16495  serine hydroxymethyltransferase [KO:K00600] [EC:2.1.2.1]
J0663_20690  gcvP; aminomethyl-transferring glycine dehydrogenase [KO:K00281] [EC:1.4.4.2]
J0663_20680  gcvT; glycine cleavage system aminomethyltransferase GcvT [KO:K00605] [EC:2.1.2.10]
J0663_26885  aminomethyltransferase family protein [KO:K00605] [EC:2.1.2.10]
J0663_26930  DUF1989 domain-containing protein [KO:K00605] [EC:2.1.2.10]
J0663_07375  dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
J0663_19090  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
J0663_28620  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
J0663_20685  gcvH; glycine cleavage system protein GcvH [KO:K02437]
J0663_04565  TIM barrel protein [KO:K01816] [EC:5.3.1.22]
J0663_29265  NAD(P)-dependent oxidoreductase [KO:K00042] [EC:1.1.1.60]
J0663_17955  glycerate kinase [KO:K11529] [EC:2.7.1.165]
J0663_23555  tartrate dehydrogenase [KO:K07246] [EC:1.1.1.93 4.1.1.73 1.1.1.83]
J0663_06135  2-dehydro-3-deoxy-phosphogluconate aldolase [KO:K01625] [EC:4.1.2.14 4.1.3.42]
J0663_07240  formate dehydrogenase subunit delta [KO:K00126] [EC:1.17.1.9]
J0663_07250  fdhF; formate dehydrogenase subunit alpha [KO:K00123] [EC:1.17.1.9]
J0663_07255  NADH-quinone oxidoreductase subunit NuoF [KO:K00124]
J0663_07260  formate dehydrogenase subunit gamma [KO:K00127]
J0663_09810  purU; formyltetrahydrofolate deformylase [KO:K01433] [EC:3.5.1.10]
J0663_25875  purU; formyltetrahydrofolate deformylase [KO:K01433] [EC:3.5.1.10]
J0663_26875  purU; formyltetrahydrofolate deformylase [KO:K01433] [EC:3.5.1.10]
J0663_30985  purU; formyltetrahydrofolate deformylase [KO:K01433] [EC:3.5.1.10]
J0663_28205  hutG; N-formylglutamate deformylase [KO:K01458] [EC:3.5.1.68]
Compound
C00007  Oxygen
C00011  CO2
C00014  Ammonia
C00022  Pyruvate
C00024  Acetyl-CoA
C00025  L-Glutamate
C00026  2-Oxoglutarate
C00027  Hydrogen peroxide
C00033  Acetate
C00036  Oxaloacetate
C00037  Glycine
C00042  Succinate
C00048  Glyoxylate
C00058  Formate
C00064  L-Glutamine
C00065  L-Serine
C00091  Succinyl-CoA
C00100  Propanoyl-CoA
C00111  Glycerone phosphate
C00136  Butanoyl-CoA
C00149  (S)-Malate
C00158  Citrate
C00160  Glycolate
C00168  Hydroxypyruvate
C00197  3-Phospho-D-glycerate
C00209  Oxalate
C00258  D-Glycerate
C00266  Glycolaldehyde
C00311  Isocitrate
C00313  Oxalyl-CoA
C00332  Acetoacetyl-CoA
C00417  cis-Aconitate
C00552  meso-Tartaric acid
C00631  2-Phospho-D-glycerate
C00683  (S)-Methylmalonyl-CoA
C00798  Formyl-CoA
C00877  Crotonoyl-CoA
C00888  Pentanoyl-CoA
C00898  (R,R)-Tartaric acid
C00975  Dihydroxyfumarate
C00988  2-Phosphoglycolate
C01127  4-Hydroxy-2-oxoglutarate
C01146  2-Hydroxy-3-oxopropanoate
C01182  D-Ribulose 1,5-bisphosphate
C01213  (R)-Methylmalonyl-CoA
C01380  Ethylene glycol
C01732  Mesaconate
C01989  3-Ethylmalate
C01990  3-Oxalomalate
C02123  3-Propylmalate
C02405  Formyl phosphate
C03217  2-Hydroxy-3-oxoadipate
C03459  2-Hydroxy-3-oxosuccinate
C03548  trans-2,3-Epoxysuccinate
C03561  (R)-3-Hydroxybutanoyl-CoA
C03618  L-threo-3-Methylaspartate
C04348  L-Malyl-CoA
C06027  L-erythro-3-Methylmalyl-CoA
C06028  2-Methylfumaryl-CoA
C06049  N-Formylderivatives
C18026  (2S)-Ethylmalonyl-CoA
C18324  (2S)-Methylsuccinyl-CoA
C20238  (2R)-Ethylmalonyl-CoA
C22337  D-Ribulose 1-phosphate
Reference
PMID:10978349
  Authors
Njau RK, Herndon CA, Hawes JW.
  Title
Novel beta-hydroxyacid dehydrogenases in Escherichia coli and Haemophilus influenzae.
  Journal
J Biol Chem 275:38780-6 (2000)
DOI:10.1074/jbc.M007432200
Reference
PMID:18065535
  Authors
Zarzycki J, Schlichting A, Strychalsky N, Muller M, Alber BE, Fuchs G
  Title
Mesaconyl-coenzyme A hydratase, a new enzyme of two central carbon metabolic pathways in bacteria.
  Journal
J Bacteriol 190:1366-74 (2008)
DOI:10.1128/JB.01621-07
Reference
PMID:18819910
  Authors
Erb TJ, Retey J, Fuchs G, Alber BE
  Title
Ethylmalonyl-CoA mutase from Rhodobacter sphaeroides defines a new subclade of coenzyme B12-dependent acyl-CoA mutases.
  Journal
J Biol Chem 283:32283-93 (2008)
DOI:10.1074/jbc.M805527200
Reference
PMID:9596633
  Authors
Coschigano KT, Melo-Oliveira R, Lim J, Coruzzi GM
  Title
Arabidopsis gls mutants and distinct Fd-GOGAT genes. Implications for photorespiration and primary nitrogen assimilation.
  Journal
Plant Cell 10:741-52 (1998)
DOI:10.1105/tpc.10.5.741
Reference
PMID:16407450
  Authors
Masclaux-Daubresse C, Reisdorf-Cren M, Pageau K, Lelandais M, Grandjean O, Kronenberger J, Valadier MH, Feraud M, Jouglet T, Suzuki A
  Title
Glutamine synthetase-glutamate synthase pathway and glutamate dehydrogenase play distinct roles in the sink-source nitrogen cycle in tobacco.
  Journal
Plant Physiol 140:444-56 (2006)
DOI:10.1104/pp.105.071910
Reference
PMID:21252347
  Authors
Khomyakova M, Bukmez O, Thomas LK, Erb TJ, Berg IA
  Title
A methylaspartate cycle in haloarchaea.
  Journal
Science 331:334-7 (2011)
DOI:10.1126/science.1196544
Reference
PMID:11513957
  Authors
Serrano JA, Bonete MJ
  Title
Sequencing, phylogenetic and transcriptional analysis of the glyoxylate bypass operon (ace) in the halophilic archaeon Haloferax volcanii.
  Journal
Biochim Biophys Acta 1520:154-62 (2001)
DOI:10.1016/S0167-4781(01)00263-9
Related
pathway
rln00010  Glycolysis / Gluconeogenesis
rln00020  Citrate cycle (TCA cycle)
rln00030  Pentose phosphate pathway
rln00053  Ascorbate and aldarate metabolism
rln00071  Fatty acid degradation
rln00230  Purine metabolism
rln00250  Alanine, aspartate and glutamate metabolism
rln00260  Glycine, serine and threonine metabolism
rln00620  Pyruvate metabolism
rln00710  Carbon fixation by Calvin cycle
rln00750  Vitamin B6 metabolism
rln00910  Nitrogen metabolism
KO pathway
ko00630   
LinkDB

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