KEGG   PATHWAY: rmn00630
Entry
rmn00630                    Pathway                                
Name
Glyoxylate and dicarboxylate metabolism - Ralstonia mannitolilytica
Class
Metabolism; Carbohydrate metabolism
Pathway map
rmn00630  Glyoxylate and dicarboxylate metabolism
rmn00630

Module
rmn_M00012  Glyoxylate cycle [PATH:rmn00630]
rmn_M00621  Glycine cleavage system [PATH:rmn00630]
Other DBs
GO: 0046487 0043648
Organism
Ralstonia mannitolilytica [GN:rmn]
Gene
TK49_10930  isocitrate lyase [KO:K01637] [EC:4.1.3.1]
TK49_21165  AMP-dependent synthetase [KO:K01895] [EC:6.2.1.1]
TK49_20305  AMP-dependent synthetase [KO:K01895] [EC:6.2.1.1]
TK49_13410  AMP-dependent synthetase [KO:K01895] [EC:6.2.1.1]
TK49_10955  malate synthase [KO:K01638] [EC:2.3.3.9]
TK49_13630  malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
TK49_13595  gltA; type II citrate synthase [KO:K01647] [EC:2.3.3.1]
TK49_20690  citrate synthase [KO:K01647] [EC:2.3.3.1]
TK49_13650  acnA; aconitate hydratase [KO:K01681] [EC:4.2.1.3]
TK49_16950  bifunctional aconitate hydratase 2/2-methylisocitrate dehydratase [KO:K01682] [EC:4.2.1.3 4.2.1.99]
TK49_04400  acetyl-CoA acetyltransferase [KO:K00626] [EC:2.3.1.9]
TK49_11425  acetyl-CoA acetyltransferase [KO:K00626] [EC:2.3.1.9]
TK49_12180  acetyl-CoA acetyltransferase [KO:K00626] [EC:2.3.1.9]
TK49_12205  acetyl-CoA acetyltransferase [KO:K00626] [EC:2.3.1.9]
TK49_05775  acetyl-CoA acetyltransferase [KO:K00626] [EC:2.3.1.9]
TK49_12200  3-ketoacyl-ACP reductase [KO:K00023] [EC:1.1.1.36]
TK49_16295  glycolate oxidase subunit GlcD [KO:K00104] [EC:1.1.99.14]
TK49_16305  glcE; glycolate oxidase [KO:K11472] [EC:1.1.99.14]
TK49_16310  glcF; glycolate oxidase iron-sulfur subunit [KO:K11473] [EC:1.1.99.14]
TK49_04350  glyoxylate reductase [KO:K12972] [EC:1.1.1.79 1.1.1.81]
TK49_12890  2-hydroxyacid dehydrogenase [KO:K12972] [EC:1.1.1.79 1.1.1.81]
TK49_21420  2-hydroxyacid dehydrogenase [KO:K12972] [EC:1.1.1.79 1.1.1.81]
TK49_08400  bifunctional glyoxylate/hydroxypyruvate reductase B [KO:K00090] [EC:1.1.1.79 1.1.1.81 1.1.1.215]
TK49_09400  2-hydroxyacid dehydrogenase [KO:K00090] [EC:1.1.1.79 1.1.1.81 1.1.1.215]
TK49_00045  phosphoglycolate phosphatase [KO:K01091] [EC:3.1.3.18]
TK49_09440  HAD family hydrolase [KO:K01091] [EC:3.1.3.18]
TK49_18550  hydrolase [KO:K01091] [EC:3.1.3.18]
TK49_08325  glyA; serine hydroxymethyltransferase [KO:K00600] [EC:2.1.2.1]
TK49_02180  glycine dehydrogenase [KO:K00281] [EC:1.4.4.2]
TK49_02190  glycine cleavage system protein T [KO:K00605] [EC:2.1.2.10]
TK49_12355  dihydrolipoamide dehydrogenase [KO:K00382] [EC:1.8.1.4]
TK49_10495  dihydrolipoamide dehydrogenase [KO:K00382] [EC:1.8.1.4]
TK49_02185  hypothetical protein [KO:K02437]
TK49_02235  glyoxylate carboligase [KO:K01608] [EC:4.1.1.47]
TK49_02230  hydroxypyruvate isomerase [KO:K01816] [EC:5.3.1.22]
TK49_17065  tartronate semialdehyde reductase [KO:K00042] [EC:1.1.1.60]
TK49_02220  tartronate semialdehyde reductase [KO:K00042] [EC:1.1.1.60]
TK49_15430  6-phosphogluconate dehydrogenase [KO:K00042] [EC:1.1.1.60]
TK49_02215  hydroxypyruvate reductase [KO:K11529] [EC:2.7.1.165]
TK49_05510  hydroxypyruvate reductase [KO:K11529] [EC:2.7.1.165]
TK49_12845  tartrate dehydrogenase [KO:K07246] [EC:1.1.1.93 4.1.1.73 1.1.1.83]
TK49_05505  tartrate dehydrogenase [KO:K07246] [EC:1.1.1.93 4.1.1.73 1.1.1.83]
TK49_21445  2-dehydro-3-deoxyphosphogluconate aldolase [KO:K01625] [EC:4.1.2.14 4.1.3.42]
TK49_15160  formate dehydrogenase [KO:K00123] [EC:1.17.1.9]
TK49_15155  formate dehydrogenase [KO:K00124]
TK49_15145  formate dehydrogenase [KO:K00127]
TK49_08485  kynurenine formamidase [KO:K07130] [EC:3.5.1.9]
TK49_13300  purU; formyltetrahydrofolate deformylase [KO:K01433] [EC:3.5.1.10]
Compound
C00007  Oxygen
C00011  CO2
C00014  Ammonia
C00022  Pyruvate
C00024  Acetyl-CoA
C00025  L-Glutamate
C00026  2-Oxoglutarate
C00027  Hydrogen peroxide
C00033  Acetate
C00036  Oxaloacetate
C00037  Glycine
C00042  Succinate
C00048  Glyoxylate
C00058  Formate
C00064  L-Glutamine
C00065  L-Serine
C00091  Succinyl-CoA
C00100  Propanoyl-CoA
C00111  Glycerone phosphate
C00136  Butanoyl-CoA
C00149  (S)-Malate
C00158  Citrate
C00160  Glycolate
C00168  Hydroxypyruvate
C00197  3-Phospho-D-glycerate
C00209  Oxalate
C00258  D-Glycerate
C00266  Glycolaldehyde
C00311  Isocitrate
C00313  Oxalyl-CoA
C00332  Acetoacetyl-CoA
C00417  cis-Aconitate
C00552  meso-Tartaric acid
C00631  2-Phospho-D-glycerate
C00683  (S)-Methylmalonyl-CoA
C00798  Formyl-CoA
C00877  Crotonoyl-CoA
C00888  Pentanoyl-CoA
C00898  (R,R)-Tartaric acid
C00975  Dihydroxyfumarate
C00988  2-Phosphoglycolate
C01127  4-Hydroxy-2-oxoglutarate
C01146  2-Hydroxy-3-oxopropanoate
C01182  D-Ribulose 1,5-bisphosphate
C01213  (R)-Methylmalonyl-CoA
C01380  Ethylene glycol
C01732  Mesaconate
C01989  3-Ethylmalate
C01990  3-Oxalomalate
C02123  3-Propylmalate
C02405  Formyl phosphate
C03217  2-Hydroxy-3-oxoadipate
C03459  2-Hydroxy-3-oxosuccinate
C03548  trans-2,3-Epoxysuccinate
C03561  (R)-3-Hydroxybutanoyl-CoA
C03618  L-threo-3-Methylaspartate
C04348  L-Malyl-CoA
C06027  L-erythro-3-Methylmalyl-CoA
C06028  2-Methylfumaryl-CoA
C06049  N-Formylderivatives
C18026  (2S)-Ethylmalonyl-CoA
C18324  (2S)-Methylsuccinyl-CoA
C20238  (2R)-Ethylmalonyl-CoA
C22337  D-Ribulose 1-phosphate
Reference
PMID:10978349
  Authors
Njau RK, Herndon CA, Hawes JW.
  Title
Novel beta-hydroxyacid dehydrogenases in Escherichia coli and Haemophilus influenzae.
  Journal
J Biol Chem 275:38780-6 (2000)
DOI:10.1074/jbc.M007432200
Reference
PMID:18065535
  Authors
Zarzycki J, Schlichting A, Strychalsky N, Muller M, Alber BE, Fuchs G
  Title
Mesaconyl-coenzyme A hydratase, a new enzyme of two central carbon metabolic pathways in bacteria.
  Journal
J Bacteriol 190:1366-74 (2008)
DOI:10.1128/JB.01621-07
Reference
PMID:18819910
  Authors
Erb TJ, Retey J, Fuchs G, Alber BE
  Title
Ethylmalonyl-CoA mutase from Rhodobacter sphaeroides defines a new subclade of coenzyme B12-dependent acyl-CoA mutases.
  Journal
J Biol Chem 283:32283-93 (2008)
DOI:10.1074/jbc.M805527200
Reference
PMID:9596633
  Authors
Coschigano KT, Melo-Oliveira R, Lim J, Coruzzi GM
  Title
Arabidopsis gls mutants and distinct Fd-GOGAT genes. Implications for photorespiration and primary nitrogen assimilation.
  Journal
Plant Cell 10:741-52 (1998)
DOI:10.1105/tpc.10.5.741
Reference
PMID:16407450
  Authors
Masclaux-Daubresse C, Reisdorf-Cren M, Pageau K, Lelandais M, Grandjean O, Kronenberger J, Valadier MH, Feraud M, Jouglet T, Suzuki A
  Title
Glutamine synthetase-glutamate synthase pathway and glutamate dehydrogenase play distinct roles in the sink-source nitrogen cycle in tobacco.
  Journal
Plant Physiol 140:444-56 (2006)
DOI:10.1104/pp.105.071910
Reference
PMID:21252347
  Authors
Khomyakova M, Bukmez O, Thomas LK, Erb TJ, Berg IA
  Title
A methylaspartate cycle in haloarchaea.
  Journal
Science 331:334-7 (2011)
DOI:10.1126/science.1196544
Reference
PMID:11513957
  Authors
Serrano JA, Bonete MJ
  Title
Sequencing, phylogenetic and transcriptional analysis of the glyoxylate bypass operon (ace) in the halophilic archaeon Haloferax volcanii.
  Journal
Biochim Biophys Acta 1520:154-62 (2001)
DOI:10.1016/S0167-4781(01)00263-9
Related
pathway
rmn00010  Glycolysis / Gluconeogenesis
rmn00020  Citrate cycle (TCA cycle)
rmn00030  Pentose phosphate pathway
rmn00053  Ascorbate and aldarate metabolism
rmn00071  Fatty acid degradation
rmn00230  Purine metabolism
rmn00250  Alanine, aspartate and glutamate metabolism
rmn00260  Glycine, serine and threonine metabolism
rmn00620  Pyruvate metabolism
rmn00710  Carbon fixation by Calvin cycle
rmn00750  Vitamin B6 metabolism
rmn00910  Nitrogen metabolism
KO pathway
ko00630   
LinkDB

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