KEGG   PATHWAY: rnc00630
Entry
rnc00630                    Pathway                                
Name
Glyoxylate and dicarboxylate metabolism - Ralstonia pseudosolanacearum RS
Class
Metabolism; Carbohydrate metabolism
Pathway map
rnc00630  Glyoxylate and dicarboxylate metabolism
rnc00630

Module
rnc_M00012  Glyoxylate cycle [PATH:rnc00630]
rnc_M00621  Glycine cleavage system [PATH:rnc00630]
Other DBs
GO: 0046487 0043648
Organism
Ralstonia pseudosolanacearum RS [GN:rnc]
Gene
GO999_09570  aceA; isocitrate lyase [KO:K01637] [EC:4.1.3.1]
GO999_17310  AMP-binding protein [KO:K01895] [EC:6.2.1.1]
GO999_20340  AMP-binding protein [KO:K01895] [EC:6.2.1.1]
GO999_07095  acs; acetate--CoA ligase [KO:K01895] [EC:6.2.1.1]
GO999_09545  malate synthase A [KO:K01638] [EC:2.3.3.9]
GO999_06875  malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
GO999_24160  hypothetical protein [KO:K01647] [EC:2.3.3.1]
GO999_06910  gltA; citrate (Si)-synthase [KO:K01647] [EC:2.3.3.1]
GO999_23615  acnA; aconitate hydratase AcnA [KO:K01681] [EC:4.2.1.3]
GO999_06850  acnA; aconitate hydratase AcnA [KO:K01681] [EC:4.2.1.3]
GO999_23625  acnB; bifunctional aconitate hydratase 2/2-methylisocitrate dehydratase [KO:K01682] [EC:4.2.1.3 4.2.1.99]
GO999_15385  acetyl-CoA C-acyltransferase [KO:K00626] [EC:2.3.1.9]
GO999_07940  acetyl-CoA C-acyltransferase [KO:K00626] [EC:2.3.1.9]
GO999_08050  acetyl-CoA C-acyltransferase [KO:K00626] [EC:2.3.1.9]
GO999_08440  acetyl-CoA C-acyltransferase [KO:K00626] [EC:2.3.1.9]
GO999_07945  3-ketoacyl-ACP reductase [KO:K00023] [EC:1.1.1.36]
GO999_03640  FAD-binding protein [KO:K00104] [EC:1.1.99.14]
GO999_03635  glcE; glycolate oxidase subunit GlcE [KO:K11472] [EC:1.1.99.14]
GO999_03630  glcF; glycolate oxidase subunit GlcF [KO:K11473] [EC:1.1.99.14]
GO999_21810  catalase [KO:K03781] [EC:1.11.1.6]
GO999_15455  glyoxylate/hydroxypyruvate reductase A [KO:K12972] [EC:1.1.1.79 1.1.1.81]
GO999_18730  D-glycerate dehydrogenase [KO:K00090] [EC:1.1.1.79 1.1.1.81 1.1.1.215]
GO999_11315  D-glycerate dehydrogenase [KO:K00090] [EC:1.1.1.79 1.1.1.81 1.1.1.215]
GO999_24330  HAD-IA family hydrolase [KO:K01091] [EC:3.1.3.18]
GO999_02530  phosphoglycolate phosphatase [KO:K01091] [EC:3.1.3.18]
GO999_11275  HAD-IIIA family hydrolase [KO:K01091] [EC:3.1.3.18]
GO999_13725  HAD-IA family hydrolase [KO:K01091] [EC:3.1.3.18]
GO999_18460  glnA; type I glutamate--ammonia ligase [KO:K01915] [EC:6.3.1.2]
GO999_12930  aminotransferase class I/II-fold pyridoxal phosphate-dependent enzyme [KO:K00600] [EC:2.1.2.1]
GO999_00775  gcvP; aminomethyl-transferring glycine dehydrogenase [KO:K00281] [EC:1.4.4.2]
GO999_00785  gcvT; glycine cleavage system aminomethyltransferase GcvT [KO:K00605] [EC:2.1.2.10]
GO999_07785  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
GO999_10060  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
GO999_00780  gcvH; glycine cleavage system protein GcvH [KO:K02437]
GO999_00855  gcl; glyoxylate carboligase [KO:K01608] [EC:4.1.1.47]
GO999_00850  hyi; hydroxypyruvate isomerase [KO:K01816] [EC:5.3.1.22]
GO999_00845  glxR; 2-hydroxy-3-oxopropionate reductase [KO:K00042] [EC:1.1.1.60]
GO999_04785  NAD-binding protein [KO:K00042] [EC:1.1.1.60]
GO999_14230  DUF4147 domain-containing protein [KO:K11529] [EC:2.7.1.165]
GO999_21140  DUF4147 domain-containing protein [KO:K11529] [EC:2.7.1.165]
GO999_21945  tartrate dehydrogenase [KO:K07246] [EC:1.1.1.93 4.1.1.73 1.1.1.83]
GO999_14235  tartrate dehydrogenase [KO:K07246] [EC:1.1.1.93 4.1.1.73 1.1.1.83]
GO999_19000  tartrate dehydrogenase [KO:K07246] [EC:1.1.1.93 4.1.1.73 1.1.1.83]
GO999_20000  eda; bifunctional 4-hydroxy-2-oxoglutarate aldolase/2-dehydro-3-deoxy-phosphogluconate aldolase [KO:K01625] [EC:4.1.2.14 4.1.3.42]
GO999_05055  molybdopterin-dependent oxidoreductase [KO:K00123] [EC:1.17.1.9]
GO999_05060  4Fe-4S dicluster domain-containing protein [KO:K00124]
GO999_05070  formate dehydrogenase subunit gamma [KO:K00127]
GO999_12765  kynB; arylformamidase [KO:K07130] [EC:3.5.1.9]
GO999_07225  purU; formyltetrahydrofolate deformylase [KO:K01433] [EC:3.5.1.10]
GO999_10945  purU; formyltetrahydrofolate deformylase [KO:K01433] [EC:3.5.1.10]
Compound
C00007  Oxygen
C00011  CO2
C00014  Ammonia
C00022  Pyruvate
C00024  Acetyl-CoA
C00025  L-Glutamate
C00026  2-Oxoglutarate
C00027  Hydrogen peroxide
C00033  Acetate
C00036  Oxaloacetate
C00037  Glycine
C00042  Succinate
C00048  Glyoxylate
C00058  Formate
C00064  L-Glutamine
C00065  L-Serine
C00091  Succinyl-CoA
C00100  Propanoyl-CoA
C00111  Glycerone phosphate
C00136  Butanoyl-CoA
C00149  (S)-Malate
C00158  Citrate
C00160  Glycolate
C00168  Hydroxypyruvate
C00197  3-Phospho-D-glycerate
C00209  Oxalate
C00258  D-Glycerate
C00266  Glycolaldehyde
C00311  Isocitrate
C00313  Oxalyl-CoA
C00332  Acetoacetyl-CoA
C00417  cis-Aconitate
C00552  meso-Tartaric acid
C00631  2-Phospho-D-glycerate
C00683  (S)-Methylmalonyl-CoA
C00798  Formyl-CoA
C00877  Crotonoyl-CoA
C00888  Pentanoyl-CoA
C00898  (R,R)-Tartaric acid
C00975  Dihydroxyfumarate
C00988  2-Phosphoglycolate
C01127  4-Hydroxy-2-oxoglutarate
C01146  2-Hydroxy-3-oxopropanoate
C01182  D-Ribulose 1,5-bisphosphate
C01213  (R)-Methylmalonyl-CoA
C01380  Ethylene glycol
C01732  Mesaconate
C01989  3-Ethylmalate
C01990  3-Oxalomalate
C02123  3-Propylmalate
C02405  Formyl phosphate
C03217  2-Hydroxy-3-oxoadipate
C03459  2-Hydroxy-3-oxosuccinate
C03548  trans-2,3-Epoxysuccinate
C03561  (R)-3-Hydroxybutanoyl-CoA
C03618  L-threo-3-Methylaspartate
C04348  L-Malyl-CoA
C06027  L-erythro-3-Methylmalyl-CoA
C06028  2-Methylfumaryl-CoA
C06049  N-Formylderivatives
C18026  (2S)-Ethylmalonyl-CoA
C18324  (2S)-Methylsuccinyl-CoA
C20238  (2R)-Ethylmalonyl-CoA
C22337  D-Ribulose 1-phosphate
Reference
PMID:10978349
  Authors
Njau RK, Herndon CA, Hawes JW.
  Title
Novel beta-hydroxyacid dehydrogenases in Escherichia coli and Haemophilus influenzae.
  Journal
J Biol Chem 275:38780-6 (2000)
DOI:10.1074/jbc.M007432200
Reference
PMID:18065535
  Authors
Zarzycki J, Schlichting A, Strychalsky N, Muller M, Alber BE, Fuchs G
  Title
Mesaconyl-coenzyme A hydratase, a new enzyme of two central carbon metabolic pathways in bacteria.
  Journal
J Bacteriol 190:1366-74 (2008)
DOI:10.1128/JB.01621-07
Reference
PMID:18819910
  Authors
Erb TJ, Retey J, Fuchs G, Alber BE
  Title
Ethylmalonyl-CoA mutase from Rhodobacter sphaeroides defines a new subclade of coenzyme B12-dependent acyl-CoA mutases.
  Journal
J Biol Chem 283:32283-93 (2008)
DOI:10.1074/jbc.M805527200
Reference
PMID:9596633
  Authors
Coschigano KT, Melo-Oliveira R, Lim J, Coruzzi GM
  Title
Arabidopsis gls mutants and distinct Fd-GOGAT genes. Implications for photorespiration and primary nitrogen assimilation.
  Journal
Plant Cell 10:741-52 (1998)
DOI:10.1105/tpc.10.5.741
Reference
PMID:16407450
  Authors
Masclaux-Daubresse C, Reisdorf-Cren M, Pageau K, Lelandais M, Grandjean O, Kronenberger J, Valadier MH, Feraud M, Jouglet T, Suzuki A
  Title
Glutamine synthetase-glutamate synthase pathway and glutamate dehydrogenase play distinct roles in the sink-source nitrogen cycle in tobacco.
  Journal
Plant Physiol 140:444-56 (2006)
DOI:10.1104/pp.105.071910
Reference
PMID:21252347
  Authors
Khomyakova M, Bukmez O, Thomas LK, Erb TJ, Berg IA
  Title
A methylaspartate cycle in haloarchaea.
  Journal
Science 331:334-7 (2011)
DOI:10.1126/science.1196544
Reference
PMID:11513957
  Authors
Serrano JA, Bonete MJ
  Title
Sequencing, phylogenetic and transcriptional analysis of the glyoxylate bypass operon (ace) in the halophilic archaeon Haloferax volcanii.
  Journal
Biochim Biophys Acta 1520:154-62 (2001)
DOI:10.1016/S0167-4781(01)00263-9
Related
pathway
rnc00010  Glycolysis / Gluconeogenesis
rnc00020  Citrate cycle (TCA cycle)
rnc00030  Pentose phosphate pathway
rnc00053  Ascorbate and aldarate metabolism
rnc00071  Fatty acid degradation
rnc00230  Purine metabolism
rnc00250  Alanine, aspartate and glutamate metabolism
rnc00260  Glycine, serine and threonine metabolism
rnc00620  Pyruvate metabolism
rnc00710  Carbon fixation by Calvin cycle
rnc00750  Vitamin B6 metabolism
rnc00910  Nitrogen metabolism
KO pathway
ko00630   
LinkDB

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