KEGG   PATHWAY: rsy00362
Entry
rsy00362                    Pathway                                
Name
Benzoate degradation - Ralstonia solanacearum UY031
Class
Metabolism; Xenobiotics biodegradation and metabolism
Pathway map
rsy00362  Benzoate degradation
rsy00362

Module
rsy_M00551  Benzoate degradation, benzoate => catechol / methylbenzoate => methylcatechol [PATH:rsy00362]
rsy_M00568  Catechol ortho-cleavage, catechol => 3-oxoadipate [PATH:rsy00362]
Other DBs
UMBBD: benz2 benz abs
GO: 0043639
Organism
Ralstonia solanacearum UY031 [GN:rsy]
Gene
RSUY_19260  cbdA; 2-halobenzoate 1,2-dioxygenase large subunit [KO:K05549] [EC:1.14.12.10 1.14.12.-]
RSUY_19270  cbdB; 2-halobenzoate 1,2-dioxygenase small subunit [KO:K05550] [EC:1.14.12.10 1.14.12.-]
RSUY_19280  benC; Benzoate 1,2-dioxygenase electron transfer component [KO:K05784] [EC:1.18.1.-]
RSUY_19290  putative oxidoreductase [KO:K05783] [EC:1.3.1.25 1.3.1.-]
RSUY_19250  catA; Catechol 1,2-dioxygenase [KO:K03381] [EC:1.13.11.1]
RSUY_19230  catB; Muconate cycloisomerase 1 [KO:K01856] [EC:5.5.1.1]
RSUY_19240  catC; Muconolactone Delta-isomerase [KO:K03464] [EC:5.3.3.4]
RSUY_12050  catD_1; 3-oxoadipate enol-lactonase 2 [KO:K01055] [EC:3.1.1.24]
RSUY_29820  catD_2; 3-oxoadipate enol-lactonase 2 [KO:K01055] [EC:3.1.1.24]
RSUY_12010  pcaI; 3-oxoadipate CoA-transferase subunit A [KO:K01031] [EC:2.8.3.6]
RSUY_12020  pcaJ; 3-oxoadipate CoA-transferase subunit B [KO:K01032] [EC:2.8.3.6]
RSUY_27940  fadA_2; 3-ketoacyl-CoA thiolase [KO:K00632] [EC:2.3.1.16]
RSUY_12030  pcaF; Beta-ketoadipyl-CoA thiolase [KO:K07823] [EC:2.3.1.174]
RSUY_10250  ywhB; 2-hydroxymuconate tautomerase [KO:K01821] [EC:5.3.2.6]
RSUY_47480  Tautomerase enzyme [KO:K01821] [EC:5.3.2.6]
RSUY_18820  pcaG; Protocatechuate 3,4-dioxygenase alpha chain [KO:K00448] [EC:1.13.11.3]
RSUY_18810  pcaH; Protocatechuate 3,4-dioxygenase beta chain [KO:K00449] [EC:1.13.11.3]
RSUY_12040  pcaB; 3-carboxy-cis,cis-muconate cycloisomerase [KO:K01857] [EC:5.5.1.2]
RSUY_11840  Carboxymuconolactone decarboxylase family protein [KO:K01607] [EC:4.1.1.44]
RSUY_12060  Carboxymuconolactone decarboxylase family protein [KO:K01607] [EC:4.1.1.44]
RSUY_46200  galD; 4-oxalomesaconate tautomerase [KO:K16514] [EC:5.3.2.8]
RSUY_46210  Amidohydrolase [KO:K10220] [EC:4.2.1.83]
RSUY_44170  4-hydroxy-4-methyl-2-oxoglutarate aldolase/4-carboxy-4-hydroxy-2-oxoadipate aldolase [KO:K10218] [EC:4.1.3.17]
RSUY_46220  4-hydroxy-4-methyl-2-oxoglutarate aldolase/4-carboxy-4-hydroxy-2-oxoadipate aldolase [KO:K10218] [EC:4.1.3.17]
RSUY_16670  Anthranilate 1,2-dioxygenase system ferredoxin--NAD(+) reductase component [KO:K00529] [EC:1.18.1.3]
RSUY_14440  fdx_1; 2Fe-2S ferredoxin [KO:K04755]
RSUY_12130  pobA; p-hydroxybenzoate hydroxylase [KO:K00481] [EC:1.14.13.2]
RSUY_32600  4-hydroxybenzoyl-CoA thioesterase [KO:K01075] [EC:3.1.2.23]
RSUY_19520  Fatty acid oxidation complex subunit alpha [KO:K07516] [EC:1.1.1.35]
RSUY_27950  fadN; putative 3-hydroxyacyl-CoA dehydrogenase [KO:K07516] [EC:1.1.1.35]
RSUY_09740  mmgC_1; Acyl-CoA dehydrogenase [KO:K00252] [EC:1.3.8.6]
RSUY_23220  paaH; 3-hydroxyadipyl-CoA dehydrogenase [KO:K00074] [EC:1.1.1.157]
RSUY_30400  hbd; 3-hydroxybutyryl-CoA dehydrogenase [KO:K00074] [EC:1.1.1.157]
RSUY_19540  fadA_1; 3-ketoacyl-CoA thiolase [KO:K00626] [EC:2.3.1.9]
RSUY_20700  bktB; Beta-ketothiolase BktB [KO:K00626] [EC:2.3.1.9]
RSUY_20750  phbA; Acetyl-CoA acetyltransferase [KO:K00626] [EC:2.3.1.9]
RSUY_27230  fadI; 3-ketoacyl-CoA thiolase [KO:K00626] [EC:2.3.1.9]
RSUY_30060  thlA; Acetyl-CoA acetyltransferase [KO:K00626] [EC:2.3.1.9]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00036  Oxaloacetate
C00084  Acetaldehyde
C00090  Catechol
C00091  Succinyl-CoA
C00146  Phenol
C00156  4-Hydroxybenzoate
C00180  Benzoate
C00196  2,3-Dihydroxybenzoate
C00230  3,4-Dihydroxybenzoate
C00332  Acetoacetyl-CoA
C00512  Benzoyl-CoA
C00527  Glutaryl-CoA
C00530  Hydroquinone
C00587  3-Hydroxybenzoate
C00596  2-Hydroxy-2,4-pentadienoate
C00628  2,5-Dihydroxybenzoate
C00682  2-Hydroxymuconate semialdehyde
C00846  3-Oxoadipate
C00877  Crotonoyl-CoA
C01063  Pimeloyl-CoA
C01144  (S)-3-Hydroxybutanoyl-CoA
C01163  3-Carboxy-cis,cis-muconate
C01278  2-Carboxy-2,5-dihydro-5-oxofuran-2-acetate
C01407  Benzene
C01751  Resorcinol
C02222  2-Maleylacetate
C02232  3-Oxoadipyl-CoA
C02411  Glutaconyl-1-CoA
C02480  cis,cis-Muconate
C02501  2-Hydroxymuconate
C02519  4-Methoxybenzoate
C02814  Benzene-1,2,4-triol
C02949  4-Hydroxybenzoyl-CoA
C03453  gamma-Oxalocrotonate
C03586  2-Oxo-2,3-dihydrofuran-5-acetate
C03589  4-Hydroxy-2-oxopentanoate
C03671  2-Pyrone-4,6-dicarboxylate
C03676  3-Hydroxy-cis,cis-muconate
C03767  4-Oxocyclohexanecarboxylate
C04091  cis-1,2-Dihydrobenzene-1,2-diol
C04115  4-Carboxy-4-hydroxy-2-oxoadipate
C04324  (1E,3E)-4-Hydroxybuta-1,3-diene-1,2,4-tricarboxylate
C04404  trans-4-Hydroxycyclohexanecarboxylate
C04434  (1E)-4-Oxobut-1-ene-1,2,4-tricarboxylate
C04480  3-Carboxy-2-hydroxymuconate semialdehyde
C04484  4-Carboxy-2-hydroxymuconate semialdehyde
C04553  3-Carboxy-2,5-dihydro-5-oxofuran-2-acetate
C05375  2-Hydroxy-2-hydropyrone-4,6-dicarboxylate
C06033  Parapyruvate
C06035  4-Methylene-2-oxoglutarate
C06321  (1R,6S)-1,6-Dihydroxycyclohexa-2,4-diene-1-carboxylate
C06322  Cyclohexa-1,5-diene-1-carbonyl-CoA
C06333  2-Aminobenzenesulfonate
C06336  3-Sulfocatechol
C06714  3-Hydroxypimeloyl-CoA
C06715  3-Oxopimeloyl-CoA
C06723  6-Carboxyhex-2-enoyl-CoA
C06749  6-Hydroxycyclohex-1-ene-1-carbonyl-CoA
C09809  Cyclohexa-2,5-diene-1-carbonyl-CoA
C09810  Cyclohexa-1,4-diene-1-carbonyl-CoA
C09811  Cyclohex-1-ene-1-carbonyl-CoA
C09812  2-Hydroxycyclohexane-1-carbonyl-CoA
C09813  2-Oxocyclohexane-1-carbonyl-CoA
C09821  6-Oxocyclohex-1-ene-1-carbonyl-CoA
C09822  Cyclohexane-1-carboxylate
C09823  Cyclohexane-1-carbonyl-CoA
C14144  5-Carboxy-2-pentenoyl-CoA
C14610  (S)-5-Oxo-2,5-dihydrofuran-2-acetate
C19682  3,4-Didehydroadipyl-CoA
C19683  3,4-Didehydroadipyl-CoA semialdehyde
C19684  2,3-Epoxy-2,3-dihydrobenzoyl-CoA
C21298  2,6-Dihydroxybenzoate
C22885  cis-4-Hydroxycyclohexane-1-carboxylate
C22887  4-Oxocyclohex-2-ene-1-carboxylate
C22920  4-Oxocyclohex-2,5-dienecarboxylate
Reference
  Authors
Carmona M, Zamarro MT, Blazquez B, Durante-Rodriguez G, Juarez JF, Valderrama JA, Barragan MJ, Garcia JL, Diaz E
  Title
Anaerobic catabolism of aromatic compounds: a genetic and genomic view.
  Journal
Microbiol Mol Biol Rev 73:71-133 (2009)
DOI:10.1128/MMBR.00021-08
Reference
  Authors
Hara H, Masai E, Miyauchi K, Katayama Y, Fukuda M.
  Title
Characterization of the 4-carboxy-4-hydroxy-2-oxoadipate aldolase gene and operon structure of the protocatechuate 4,5-cleavage pathway genes in Sphingomonas paucimobilis SYK-6.
  Journal
J Bacteriol 185:41-50 (2003)
DOI:10.1128/JB.185.1.41-50.2003
Reference
  Authors
Maruyama K, Shibayama T, Ichikawa A, Sakou Y, Yamada S, Sugisaki H.
  Title
Cloning and characterization of the genes encoding enzymes for the protocatechuate meta-degradation pathway of Pseudomonas ochraceae NGJ1.
  Journal
Biosci Biotechnol Biochem 68:1434-41 (2004)
DOI:10.1271/bbb.68.1434
Reference
  Authors
Mampel J, Ruff J, Junker F, Cook AM.
  Title
The oxygenase component of the 2-aminobenzenesulfonate dioxygenase system from Alcaligenes sp. strain O-1.
  Journal
Microbiology 145 ( Pt 11):3255-64 (1999)
DOI:10.1099/00221287-145-11-3255
Reference
PMID:8002948
  Authors
Junker F, Field JA, Bangerter F, Ramsteiner K, Kohler HP, Joannou CL, Mason JR, Leisinger T, Cook AM.
  Title
Oxygenation and spontaneous deamination of 2-aminobenzenesulphonic acid in Alcaligenes sp. strain O-1 with subsequent meta ring cleavage and spontaneous desulphonation to 2-hydroxymuconic acid.
  Journal
Biochem J 300 ( Pt 2):429-36 (1994)
DOI:10.1042/bj3000429
Reference
PMID:8990279
  Authors
Harwood CS, Gibson J.
  Title
Shedding light on anaerobic benzene ring degradation: a process unique to prokaryotes?
  Journal
J Bacteriol 179:301-9 (1997)
DOI:10.1128/JB.179.2.301-309.1997
Reference
  Authors
Peters F, Shinoda Y, McInerney MJ, Boll M.
  Title
Cyclohexa-1,5-diene-1-carbonyl-coenzyme A (CoA) hydratases of Geobacter metallireducens and Syntrophus aciditrophicus: Evidence for a common benzoyl-CoA degradation pathway in facultative and strict anaerobes.
  Journal
J Bacteriol 189:1055-60 (2007)
DOI:10.1128/JB.01467-06
Reference
  Authors
Cowles CE, Nichols NN, Harwood CS.
  Title
BenR, a XylS homologue, regulates three different pathways of aromatic acid degradation in Pseudomonas putida.
  Journal
J Bacteriol 182:6339-46 (2000)
DOI:10.1128/JB.182.22.6339-6346.2000
Reference
  Authors
Smith MA, Weaver VB, Young DM, Ornston LN.
  Title
Genes for chlorogenate and hydroxycinnamate catabolism (hca) are linked to functionally related genes in the dca-pca-qui-pob-hca chromosomal cluster of Acinetobacter sp. strain ADP1.
  Journal
Appl Environ Microbiol 69:524-32 (2003)
DOI:10.1128/AEM.69.1.524-532.2003
Reference
  Authors
Kuntze K, Shinoda Y, Moutakki H, McInerney MJ, Vogt C, Richnow HH, Boll M
  Title
6-Oxocyclohex-1-ene-1-carbonyl-coenzyme A hydrolases from obligately anaerobic bacteria: characterization and identification of its gene as a functional marker for aromatic compounds degrading anaerobes.
  Journal
Environ Microbiol 10:1547-56 (2008)
DOI:10.1111/j.1462-2920.2008.01570.x
Reference
  Authors
Pelletier DA, Harwood CS
  Title
2-Hydroxycyclohexanecarboxyl coenzyme A dehydrogenase, an enzyme characteristic of the anaerobic benzoate degradation pathway used by Rhodopseudomonas palustris.
  Journal
J Bacteriol 182:2753-60 (2000)
DOI:10.1128/JB.182.10.2753-2760.2000
Reference
  Authors
Elshahed MS, Bhupathiraju VK, Wofford NQ, Nanny MA, McInerney MJ
  Title
Metabolism of benzoate, cyclohex-1-ene carboxylate, and cyclohexane carboxylate by "Syntrophus aciditrophicus" strain SB in syntrophic association with H(2)-using microorganisms.
  Journal
Appl Environ Microbiol 67:1728-38 (2001)
DOI:10.1128/AEM.67.4.1728-1738.2001
Reference
  Authors
Nogales J, Canales A, Jimenez-Barbero J, Serra B, Pingarron JM, Garcia JL, Diaz E
  Title
Unravelling the gallic acid degradation pathway in bacteria: the gal cluster from Pseudomonas putida.
  Journal
Mol Microbiol 79:359-74 (2011)
DOI:10.1111/j.1365-2958.2010.07448.x
Related
pathway
rsy00010  Glycolysis / Gluconeogenesis
rsy00020  Citrate cycle (TCA cycle)
rsy00350  Tyrosine metabolism
rsy00360  Phenylalanine metabolism
rsy00361  Chlorocyclohexane and chlorobenzene degradation
rsy00627  Aminobenzoate degradation
rsy00790  Folate biosynthesis
KO pathway
ko00362   
LinkDB

DBGET integrated database retrieval system