KEGG   PATHWAY: rti03030
Entry
rti03030                    Pathway                                
Name
DNA replication - Rufibacter tibetensis
Description
A complex network of interacting proteins and enzymes is required for DNA replication. Generally, DNA replication follows a multistep enzymatic pathway. At the DNA replication fork, a DNA helicase (DnaB or MCM complex) precedes the DNA synthetic machinery and unwinds the duplex parental DNA in cooperation with the SSB or RPA. On the leading strand, replication occurs continuously in a 5 to 3 direction, whereas on the lagging strand, DNA replication occurs discontinuously by synthesis and joining of short Okazaki fragments. In prokaryotes, the leading strand replication apparatus consists of a DNA polymerase (pol III core), a sliding clamp (beta), and a clamp loader (gamma delta complex). The DNA primase (DnaG) is needed to form RNA primers. Normally, during replication of the lagging-strand DNA template, an RNA primer is removed either by an RNase H or by the 5 to 3 exonuclease activity of DNA pol I, and the DNA ligase joins the Okazaki fragments. In eukaryotes, three DNA polymerases (alpha, delta, and epsilon) have been identified. DNA primase forms a permanent complex with DNA polymerase alpha. PCNA and RFC function as a clamp and a clamp loader. FEN 1 and RNase H1 remove the RNA from the Okazaki fragments and DNA ligase I joins the DNA.
Class
Genetic Information Processing; Replication and repair
Pathway map
rti03030  DNA replication
rti03030

Organism
Rufibacter tibetensis [GN:rti]
Gene
DC20_06080  hypothetical protein [KO:K02342] [EC:2.7.7.7]
DC20_02750  exonuclease [KO:K02342] [EC:2.7.7.7]
DC20_10905  hypothetical protein [KO:K02342] [EC:2.7.7.7]
DC20_13655  DNA polymerase III subunit epsilon [KO:K02342] [EC:2.7.7.7]
DC20_21255  DNA polymerase III subunit epsilon [KO:K02342] [EC:2.7.7.7]
DC20_18825  DNA polymerase III subunit epsilon [KO:K02342] [EC:2.7.7.7]
DC20_03875  DNA polymerase III subunit alpha [KO:K02337] [EC:2.7.7.7]
DC20_05050  DNA polymerase III subunit gamma/tau [KO:K02343] [EC:2.7.7.7]
DC20_12815  DNA polymerase III subunit delta [KO:K02341] [EC:2.7.7.7]
DC20_18690  DNA polymerase III subunit delta [KO:K02340] [EC:2.7.7.7]
DC20_16515  DNA polymerase III subunit beta [KO:K02338] [EC:2.7.7.7]
DC20_21240  replicative DNA helicase [KO:K02314] [EC:5.6.2.3]
DC20_03510  DNA primase [KO:K02316] [EC:2.7.7.101]
DC20_10180  single-stranded DNA-binding protein [KO:K03111]
DC20_03090  ribonuclease HI [KO:K03469] [EC:3.1.26.4]
DC20_03340  ribonuclease HII [KO:K03470] [EC:3.1.26.4]
DC20_09050  DNA polymerase I [KO:K02335] [EC:2.7.7.7]
DC20_17175  DNA ligase [KO:K01972] [EC:6.5.1.2]
Reference
PMID:8087839
  Authors
Stillman B.
  Title
Smart machines at the DNA replication fork.
  Journal
Cell 78:725-8 (1994)
DOI:10.1016/S0092-8674(94)90362-X
Reference
PMID:9759502
  Authors
Waga S, Stillman B.
  Title
The DNA replication fork in eukaryotic cells.
  Journal
Annu Rev Biochem 67:721-51 (1998)
DOI:10.1146/annurev.biochem.67.1.721
KO pathway
ko03030   
LinkDB

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