KEGG   PATHWAY: rua03030
Entry
rua03030                    Pathway                                
Name
DNA replication - Ruegeria sp. AD91A
Description
A complex network of interacting proteins and enzymes is required for DNA replication. Generally, DNA replication follows a multistep enzymatic pathway. At the DNA replication fork, a DNA helicase (DnaB or MCM complex) precedes the DNA synthetic machinery and unwinds the duplex parental DNA in cooperation with the SSB or RPA. On the leading strand, replication occurs continuously in a 5 to 3 direction, whereas on the lagging strand, DNA replication occurs discontinuously by synthesis and joining of short Okazaki fragments. In prokaryotes, the leading strand replication apparatus consists of a DNA polymerase (pol III core), a sliding clamp (beta), and a clamp loader (gamma delta complex). The DNA primase (DnaG) is needed to form RNA primers. Normally, during replication of the lagging-strand DNA template, an RNA primer is removed either by an RNase H or by the 5 to 3 exonuclease activity of DNA pol I, and the DNA ligase joins the Okazaki fragments. In eukaryotes, three DNA polymerases (alpha, delta, and epsilon) have been identified. DNA primase forms a permanent complex with DNA polymerase alpha. PCNA and RFC function as a clamp and a clamp loader. FEN 1 and RNase H1 remove the RNA from the Okazaki fragments and DNA ligase I joins the DNA.
Class
Genetic Information Processing; Replication and repair
Pathway map
rua03030  DNA replication
rua03030

Organism
Ruegeria sp. AD91A [GN:rua]
Gene
D1823_07060  3'-5' exonuclease [KO:K02342] [EC:2.7.7.7]
D1823_14725  DNA polymerase III subunit epsilon [KO:K02342] [EC:2.7.7.7]
D1823_19020  DNA polymerase III subunit alpha [KO:K02337] [EC:2.7.7.7]
D1823_17180  DNA polymerase III subunit gamma/tau [KO:K02343] [EC:2.7.7.7]
D1823_02275  DNA polymerase III subunit delta' [KO:K02341] [EC:2.7.7.7]
D1823_16835  DNA polymerase III subunit delta [KO:K02340] [EC:2.7.7.7]
D1823_04105  DNA polymerase III subunit chi [KO:K02339] [EC:2.7.7.7]
D1823_13715  DNA polymerase III subunit beta [KO:K02338] [EC:2.7.7.7]
D1823_04325  replicative DNA helicase [KO:K02314] [EC:5.6.2.3]
D1823_08020  DNA primase [KO:K02316] [EC:2.7.7.101]
D1823_06805  ssb; single-stranded DNA-binding protein [KO:K03111]
D1823_07610  hypothetical protein [KO:K03111]
D1823_10610  ribonuclease HI [KO:K03469] [EC:3.1.26.4]
D1823_16750  ribonuclease HII [KO:K03470] [EC:3.1.26.4]
D1823_15770  DNA polymerase I [KO:K02335] [EC:2.7.7.7]
D1823_05675  ligA; NAD-dependent DNA ligase LigA [KO:K01972] [EC:6.5.1.2]
Reference
PMID:8087839
  Authors
Stillman B.
  Title
Smart machines at the DNA replication fork.
  Journal
Cell 78:725-8 (1994)
DOI:10.1016/S0092-8674(94)90362-X
Reference
PMID:9759502
  Authors
Waga S, Stillman B.
  Title
The DNA replication fork in eukaryotic cells.
  Journal
Annu Rev Biochem 67:721-51 (1998)
DOI:10.1146/annurev.biochem.67.1.721
KO pathway
ko03030   
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