KEGG   PATHWAY: sacs00020
Entry
sacs00020                   Pathway                                
Name
Citrate cycle (TCA cycle) - Sulfolobus acidocaldarius SUSAZ
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
sacs00020  Citrate cycle (TCA cycle)
sacs00020

Module
sacs_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:sacs00020]
sacs_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:sacs00020]
sacs_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:sacs00020]
sacs_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:sacs00020]
sacs_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:sacs00020]
Other DBs
GO: 0006099
Organism
Sulfolobus acidocaldarius SUSAZ [GN:sacs]
Gene
SUSAZ_01230  citrate synthase [KO:K01647] [EC:2.3.3.1]
SUSAZ_05780  aconitate hydratase [KO:K01681] [EC:4.2.1.3]
SUSAZ_11185  isocitrate dehydrogenase [KO:K00031] [EC:1.1.1.42]
SUSAZ_01720  FAD-dependent pyridine nucleotide-disulfide oxidoreductase [KO:K00382] [EC:1.8.1.4]
SUSAZ_00690  FAD-dependent pyridine nucleotide-disulfide oxidoreductase [KO:K00382] [EC:1.8.1.4]
SUSAZ_01055  2-oxoacid:ferredoxin oxidoreductase subunit alpha [KO:K00174] [EC:1.2.7.3 1.2.7.11]
SUSAZ_10840  2-oxoacid:ferredoxin oxidoreductase subunit alpha [KO:K00174] [EC:1.2.7.3 1.2.7.11]
SUSAZ_01050  2-oxoacid ferredoxin oxidoreductase subunit beta [KO:K00175] [EC:1.2.7.3 1.2.7.11]
SUSAZ_10845  2-oxoacid ferredoxin oxidoreductase subunit beta [KO:K00175] [EC:1.2.7.3 1.2.7.11]
SUSAZ_06045  succinyl-CoA synthetase subunit alpha [KO:K01902] [EC:6.2.1.5]
SUSAZ_06040  succinate--CoA ligase [KO:K01903] [EC:6.2.1.5]
SUSAZ_04515  sdhA; succinate dehydrogenase [KO:K00239] [EC:1.3.5.1]
SUSAZ_04510  succinate dehydrogenase [KO:K00240] [EC:1.3.5.1]
SUSAZ_04505  disulfide reductase [KO:K00241]
SUSAZ_04500  succinate dehydrogenase [KO:K18859]
SUSAZ_00625  fumarate hydratase [KO:K01679] [EC:4.2.1.2]
SUSAZ_01250  malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
SUSAZ_05130  phosphoenolpyruvate carboxykinase [KO:K01596] [EC:4.1.1.32]
SUSAZ_05075  pyruvate ferredoxin oxidoreductase [KO:K00169] [EC:1.2.7.1]
SUSAZ_10565  pyruvate ferredoxin oxidoreductase [KO:K00169] [EC:1.2.7.1]
SUSAZ_10570  2-ketoisovalerate ferredoxin oxidoreductase subunit beta [KO:K00170] [EC:1.2.7.1]
SUSAZ_05070  pyruvate synthase [KO:K00170] [EC:1.2.7.1]
SUSAZ_10555  pyruvate synthase [KO:K00172] [EC:1.2.7.1]
SUSAZ_10560  ferredoxin [KO:K00171] [EC:1.2.7.1]
SUSAZ_05080  (4Fe-4S)-binding protein [KO:K00171] [EC:1.2.7.1]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
sacs00010  Glycolysis / Gluconeogenesis
sacs00053  Ascorbate and aldarate metabolism
sacs00061  Fatty acid biosynthesis
sacs00071  Fatty acid degradation
sacs00190  Oxidative phosphorylation
sacs00220  Arginine biosynthesis
sacs00250  Alanine, aspartate and glutamate metabolism
sacs00280  Valine, leucine and isoleucine degradation
sacs00350  Tyrosine metabolism
sacs00470  D-Amino acid metabolism
sacs00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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