KEGG   PATHWAY: saf00020
Entry
saf00020                    Pathway                                
Name
Citrate cycle (TCA cycle) - Sulfurihydrogenibium azorense
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
saf00020  Citrate cycle (TCA cycle)
saf00020

Module
saf_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:saf00020]
saf_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:saf00020]
Other DBs
GO: 0006099
Organism
Sulfurihydrogenibium azorense [GN:saf]
Gene
SULAZ_1106  citrate synthase 2 (Citrate synthase II) [KO:K01647] [EC:2.3.3.1]
SULAZ_0528  ATP-citrate synthase (ATP-citrate (pro-S-)-lyase)(Citrate cleavage enzyme) [KO:K15230] [EC:2.3.3.8]
SULAZ_0527  ATP-citrate synthase (ATP-citrate (pro-S-)-lyase)(Citrate cleavage enzyme) [KO:K15231] [EC:2.3.3.8]
SULAZ_1512  acnB; aconitate hydratase 2 [KO:K01682] [EC:4.2.1.3 4.2.1.99]
SULAZ_0526  isocitrate dehydrogenase [NADP] (oxalosuccinatedecarboxylase) (idh) (nadp(+)-specific icdh) (idp) [KO:K00031] [EC:1.1.1.42]
SULAZ_0247  dihydrolipoamide dehydrogenase [KO:K00382] [EC:1.8.1.4]
SULAZ_0640  sucD; succinate-CoA ligase, alpha subunit subfamily [KO:K01902] [EC:6.2.1.5]
SULAZ_0638  succinyl-CoA synthetase beta chain (SCS-alpha)(Vegetative protein 63) (VEG63) [KO:K01903] [EC:6.2.1.5]
SULAZ_0124  fumarate reductase, iron-sulfur subunit [KO:K00240] [EC:1.3.5.1]
SULAZ_0123  succinate dehydrogenase, subunit C [KO:K00241]
SULAZ_0635  L(+)-tartrate dehydratase subunit alpha (L-TTD alpha) [KO:K01677] [EC:4.2.1.2]
SULAZ_0637  fumarate hydratase, class I [KO:K01678] [EC:4.2.1.2]
SULAZ_0634  malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
SULAZ_1496  pyruvate carboxylase (Pyruvic carboxylase) (PYC) [KO:K01959] [EC:6.4.1.1]
SULAZ_0887  oadA; oxaloacetate decarboxylase alpha subunit [KO:K01960] [EC:6.4.1.1]
SULAZ_1513  putative dehydrogenase complex, E1 component, alpha subunit [KO:K00161] [EC:1.2.4.1]
SULAZ_1514  pyruvate dehydrogenase e1 component suBunit beta, precursor (pdhe1-b) [KO:K00162] [EC:1.2.4.1]
SULAZ_1516  dihydrolipoyllysine-residue acetyltransferase component 2 of pyruvatedehydrogenase complex, (pyruvatedehydrogenase complex e2 subunit 2) (pdce2) (e2) (dihydrolipoamide s-acetyltransferase component 2 of pyruvate dehydrogenase complex) (pdc-e2) [KO:K00627] [EC:2.3.1.12]
SULAZ_0655  pyruvate:ferredoxin oxidoreductase alpha subunit [KO:K00169] [EC:1.2.7.1]
SULAZ_0642  subunit of 2-oxoglutarate:ferredoxin oxidoredutase [KO:K00169] [EC:1.2.7.1]
SULAZ_0643  subunit of 2-oxoglutarate:ferredoxin oxidoredutase [KO:K00170] [EC:1.2.7.1]
SULAZ_0656  pyruvate:ferredoxin oxidoreductase beta subunit [KO:K00170] [EC:1.2.7.1]
SULAZ_0644  subunit of 2-oxoglutarate:ferredoxin oxidoredutase [KO:K00172] [EC:1.2.7.1]
SULAZ_0657  pyruvate:ferredoxin oxidoreductase gamma subunit [KO:K00172] [EC:1.2.7.1]
SULAZ_0645  conserved domain protein [KO:K00171] [EC:1.2.7.1]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
saf00010  Glycolysis / Gluconeogenesis
saf00061  Fatty acid biosynthesis
saf00190  Oxidative phosphorylation
saf00220  Arginine biosynthesis
saf00250  Alanine, aspartate and glutamate metabolism
saf00280  Valine, leucine and isoleucine degradation
saf00350  Tyrosine metabolism
saf00470  D-Amino acid metabolism
saf00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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