KEGG   PATHWAY: sba00020
Entry
sba00020                    Pathway                                
Name
Citrate cycle (TCA cycle) - Sulfurospirillum barnesii
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
sba00020  Citrate cycle (TCA cycle)
sba00020

Module
sba_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:sba00020]
sba_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:sba00020]
sba_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:sba00020]
Other DBs
GO: 0006099
Organism
Sulfurospirillum barnesii [GN:sba]
Gene
Sulba_2470  citrate synthase I, hexameric type [KO:K01647] [EC:2.3.3.1]
Sulba_1269  aconitase [KO:K01682] [EC:4.2.1.3 4.2.1.99]
Sulba_1163  isocitrate dehydrogenase, NADP-dependent, monomeric type [KO:K00031] [EC:1.1.1.42]
Sulba_1169  2-oxoacid:ferredoxin oxidoreductase, alpha subunit [KO:K00174] [EC:1.2.7.3 1.2.7.11]
Sulba_1170  2-oxoacid:ferredoxin oxidoreductase, beta subunit [KO:K00175] [EC:1.2.7.3 1.2.7.11]
Sulba_1171  2-oxoacid:ferredoxin oxidoreductase, gamma subunit [KO:K00177] [EC:1.2.7.3]
Sulba_1168  ferredoxin [KO:K00176] [EC:1.2.7.3]
Sulba_1166  succinyl-CoA synthetase, alpha subunit [KO:K01902] [EC:6.2.1.5]
Sulba_1165  succinyl-CoA synthetase, beta subunit [KO:K01903] [EC:6.2.1.5]
Sulba_0738  succinate dehydrogenase subunit B [KO:K00240] [EC:1.3.5.1]
Sulba_1079  heterodisulfide reductase, subunit B [KO:K00241]
Sulba_0739  heterodisulfide reductase, subunit B [KO:K00241]
Sulba_0440  ubiquinone-dependent succinate dehydrogenase or fumarate reductase, flavoprotein subunit [KO:K00233] [EC:1.3.5.1 7.1.1.12]
Sulba_0441  succinate dehydrogenase and fumarate reductase iron-sulfur protein [KO:K25995] [EC:1.3.5.1 7.1.1.12]
Sulba_0439  succinate dehydrogenase/fumarate reductase, cytochrome b subunit [KO:K25996]
Sulba_1331  hydro-lyase, Fe-S type, tartrate/fumarate subfamily [KO:K01677] [EC:4.2.1.2]
Sulba_1330  hydro-lyase family enzyme, Fe-S type, tartrate/fumarate subfamily [KO:K01678] [EC:4.2.1.2]
Sulba_1174  fumarase, class II [KO:K01679] [EC:4.2.1.2]
Sulba_1164  malate dehydrogenase (NAD) [KO:K00024] [EC:1.1.1.37]
Sulba_0552  putative dehydrogenase [KO:K00116] [EC:1.1.5.4]
Sulba_0659  pyruvate/oxaloacetate carboxyltransferase [KO:K01960] [EC:6.4.1.1]
Sulba_0661  ATP-dependent phosphoenolpyruvate carboxykinase [KO:K01610] [EC:4.1.1.49]
Sulba_2012  pyruvate:ferredoxin (flavodoxin) oxidoreductase, homodimeric [KO:K03737] [EC:1.2.7.1 1.2.7.-]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
sba00010  Glycolysis / Gluconeogenesis
sba00053  Ascorbate and aldarate metabolism
sba00061  Fatty acid biosynthesis
sba00190  Oxidative phosphorylation
sba00220  Arginine biosynthesis
sba00250  Alanine, aspartate and glutamate metabolism
sba00280  Valine, leucine and isoleucine degradation
sba00350  Tyrosine metabolism
sba00470  D-Amino acid metabolism
sba00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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