KEGG   PATHWAY: sbal00020
Entry
sbal00020                   Pathway                                
Name
Citrate cycle (TCA cycle) - Candidatus Sulfurimonas baltica
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
sbal00020  Citrate cycle (TCA cycle)
sbal00020

Module
sbal_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:sbal00020]
sbal_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:sbal00020]
sbal_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:sbal00020]
sbal_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:sbal00020]
sbal_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:sbal00020]
Other DBs
GO: 0006099
Organism
Candidatus Sulfurimonas baltica [GN:sbal]
Gene
HUE88_13715  citrate synthase [KO:K01647] [EC:2.3.3.1]
HUE88_09990  ATP citrate synthase [KO:K15230] [EC:2.3.3.8]
HUE88_09995  ATPase [KO:K15231] [EC:2.3.3.8]
HUE88_06250  acnB; bifunctional aconitate hydratase 2/2-methylisocitrate dehydratase [KO:K01682] [EC:4.2.1.3 4.2.1.99]
HUE88_06280  NADP-dependent isocitrate dehydrogenase [KO:K00031] [EC:1.1.1.42]
HUE88_12750  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
HUE88_06310  2-oxoglutarate synthase subunit alpha [KO:K00174] [EC:1.2.7.3 1.2.7.11]
HUE88_06315  2-oxoglutarate ferredoxin oxidoreductase subunit beta [KO:K00175] [EC:1.2.7.3 1.2.7.11]
HUE88_06320  2-oxoacid:acceptor oxidoreductase family protein [KO:K00177] [EC:1.2.7.3]
HUE88_06305  4Fe-4S dicluster domain-containing protein [KO:K00176] [EC:1.2.7.3]
HUE88_06300  sucD; succinate--CoA ligase subunit alpha [KO:K01902] [EC:6.2.1.5]
HUE88_06295  sucC; ADP-forming succinate--CoA ligase subunit beta [KO:K01903] [EC:6.2.1.5]
HUE88_05175  FAD-dependent oxidoreductase [KO:K00239] [EC:1.3.5.1]
HUE88_05170  sdhB; succinate dehydrogenase iron-sulfur subunit [KO:K00240] [EC:1.3.5.1]
HUE88_05165  CoB--CoM heterodisulfide reductase iron-sulfur subunit B family protein [KO:K00241]
HUE88_05150  fumarate reductase flavoprotein subunit [KO:K00233] [EC:1.3.5.1 7.1.1.12]
HUE88_05145  fumarate reductase iron-sulfur subunit [KO:K25995] [EC:1.3.5.1 7.1.1.12]
HUE88_05155  fumarate reductase cytochrome b subunit [KO:K25996]
HUE88_06290  fumC; class II fumarate hydratase [KO:K01679] [EC:4.2.1.2]
HUE88_06285  mdh; malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
HUE88_02635  FAD-dependent oxidoreductase [KO:K00116] [EC:1.1.5.4]
HUE88_04755  acetyl-CoA carboxylase biotin carboxylase subunit [KO:K01959] [EC:6.4.1.1]
HUE88_09440  acetyl-CoA carboxylase biotin carboxylase subunit [KO:K01959] [EC:6.4.1.1]
HUE88_04390  biotin attachment protein [KO:K01960] [EC:6.4.1.1]
HUE88_01860  pckA; phosphoenolpyruvate carboxykinase (ATP) [KO:K01610] [EC:4.1.1.49]
HUE88_12770  pdhA; pyruvate dehydrogenase (acetyl-transferring) E1 component subunit alpha [KO:K00161] [EC:1.2.4.1]
HUE88_12775  alpha-ketoacid dehydrogenase subunit beta [KO:K00162] [EC:1.2.4.1]
HUE88_12780  2-oxo acid dehydrogenase subunit E2 [KO:K00627] [EC:2.3.1.12]
HUE88_12590  2-oxoacid:ferredoxin oxidoreductase subunit alpha [KO:K00169] [EC:1.2.7.1]
HUE88_12585  pyruvate ferredoxin oxidoreductase [KO:K00170] [EC:1.2.7.1]
HUE88_12600  pyruvate flavodoxin oxidoreductase subunit gamma [KO:K00172] [EC:1.2.7.1]
HUE88_12595  4Fe-4S binding protein [KO:K00171] [EC:1.2.7.1]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
sbal00010  Glycolysis / Gluconeogenesis
sbal00053  Ascorbate and aldarate metabolism
sbal00061  Fatty acid biosynthesis
sbal00071  Fatty acid degradation
sbal00190  Oxidative phosphorylation
sbal00220  Arginine biosynthesis
sbal00250  Alanine, aspartate and glutamate metabolism
sbal00280  Valine, leucine and isoleucine degradation
sbal00350  Tyrosine metabolism
sbal00470  D-Amino acid metabolism
sbal00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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