KEGG   PATHWAY: scas00020
Entry
scas00020                   Pathway                                
Name
Citrate cycle (TCA cycle) - Saccharolobus caldissimus
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
scas00020  Citrate cycle (TCA cycle)
scas00020

Module
scas_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:scas00020]
scas_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:scas00020]
scas_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:scas00020]
scas_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:scas00020]
scas_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:scas00020]
Other DBs
GO: 0006099
Organism
Saccharolobus caldissimus [GN:scas]
Gene
SACC_18370  citrate synthase [KO:K01647] [EC:2.3.3.1]
SACC_22500  citrate synthase [KO:K01647] [EC:2.3.3.1]
SACC_09860  aconitate hydratase 1 [KO:K01681] [EC:4.2.1.3]
SACC_20960  isocitrate dehydrogenase [KO:K00031] [EC:1.1.1.42]
SACC_10130  pyridine nucleotide-disulfide oxidoreductase [KO:K00382] [EC:1.8.1.4]
SACC_21280  pyridine nucleotide-disulfide oxidoreductase [KO:K00382] [EC:1.8.1.4]
SACC_22250  pyridine nucleotide-disulfide oxidoreductase [KO:K00382] [EC:1.8.1.4]
SACC_24690  dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
SACC_17540  2-oxoacid:ferredoxin oxidoreductase subunit alpha [KO:K00174] [EC:1.2.7.3 1.2.7.11]
SACC_17530  2-oxoacid ferredoxin oxidoreductase subunit beta [KO:K00175] [EC:1.2.7.3 1.2.7.11]
SACC_17930  succinate--CoA ligase subunit alpha [KO:K01902] [EC:6.2.1.5]
SACC_17940  succinate--CoA ligase [KO:K01903] [EC:6.2.1.5]
SACC_19320  succinate dehydrogenase flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
SACC_19310  succinate dehydrogenase [KO:K00240] [EC:1.3.5.1]
SACC_19300  disulfide reductase [KO:K00241]
SACC_19290  hypothetical protein [KO:K18859]
SACC_09580  fumarate hydratase [KO:K01679] [EC:4.2.1.2]
SACC_22460  malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
SACC_10780  phosphoenolpyruvate carboxykinase [KO:K01596] [EC:4.1.1.32]
SACC_21320  acoC; dihydrolipoamide acetyltransferase component of pyruvate dehydrogenase complex [KO:K00627] [EC:2.3.1.12]
SACC_11350  pyruvate ferredoxin oxidoreductase [KO:K00169] [EC:1.2.7.1]
SACC_12000  oxalate oxidoreductase subunit alpha [KO:K00169] [EC:1.2.7.1]
SACC_15050  pyruvate ferredoxin oxidoreductase [KO:K00169] [EC:1.2.7.1]
SACC_11360  2-ketoisovalerate ferredoxin oxidoreductase [KO:K00170] [EC:1.2.7.1]
SACC_12010  oxalate oxidoreductase subunit beta [KO:K00170] [EC:1.2.7.1]
SACC_15040  2-ketoisovalerate ferredoxin oxidoreductase [KO:K00170] [EC:1.2.7.1]
SACC_11330  pyruvate synthase [KO:K00172] [EC:1.2.7.1]
SACC_15070  pyruvate synthase [KO:K00172] [EC:1.2.7.1]
SACC_11340  ferredoxin [KO:K00171] [EC:1.2.7.1]
SACC_15060  ferredoxin [KO:K00171] [EC:1.2.7.1]
SACC_11990  oxalate oxidoreductase subunit delta [KO:K00171] [EC:1.2.7.1]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
scas00010  Glycolysis / Gluconeogenesis
scas00053  Ascorbate and aldarate metabolism
scas00061  Fatty acid biosynthesis
scas00071  Fatty acid degradation
scas00190  Oxidative phosphorylation
scas00220  Arginine biosynthesis
scas00250  Alanine, aspartate and glutamate metabolism
scas00280  Valine, leucine and isoleucine degradation
scas00350  Tyrosine metabolism
scas00470  D-Amino acid metabolism
scas00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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