KEGG   PATHWAY: sdeg00630
Entry
sdeg00630                   Pathway                                
Name
Glyoxylate and dicarboxylate metabolism - Stutzerimonas degradans
Class
Metabolism; Carbohydrate metabolism
Pathway map
sdeg00630  Glyoxylate and dicarboxylate metabolism
sdeg00630

Module
sdeg_M00621  Glycine cleavage system [PATH:sdeg00630]
Other DBs
GO: 0046487 0043648
Organism
Stutzerimonas degradans [GN:sdeg]
Gene
GOM96_17985  isocitrate lyase [KO:K01637] [EC:4.1.3.1]
GOM96_03820  acs; acetate--CoA ligase [KO:K01895] [EC:6.2.1.1]
GOM96_08400  malate synthase G [KO:K01638] [EC:2.3.3.9]
GOM96_08795  malate synthase G [KO:K01638] [EC:2.3.3.9]
GOM96_00505  gltA; citrate (Si)-synthase [KO:K01647] [EC:2.3.3.1]
GOM96_02075  acnA; aconitate hydratase AcnA [KO:K01681] [EC:4.2.1.3]
GOM96_03450  acnB; bifunctional aconitate hydratase 2/2-methylisocitrate dehydratase [KO:K01682] [EC:4.2.1.3 4.2.1.99]
GOM96_18160  acetyl-CoA C-acyltransferase [KO:K00626] [EC:2.3.1.9]
GOM96_06630  acetyl-CoA C-acyltransferase [KO:K00626] [EC:2.3.1.9]
GOM96_01445  acetyl-CoA C-acyltransferase [KO:K00626] [EC:2.3.1.9]
GOM96_01465  acetyl-CoA C-acetyltransferase [KO:K00626] [EC:2.3.1.9]
GOM96_01785  acetyl-CoA C-acyltransferase [KO:K00626] [EC:2.3.1.9]
GOM96_15770  3-hydroxybutyryl-CoA dehydratase [KO:K17865] [EC:4.2.1.55]
GOM96_08420  glcD; glycolate oxidase subunit GlcD [KO:K00104] [EC:1.1.99.14]
GOM96_08415  glcE; glycolate oxidase subunit GlcE [KO:K11472] [EC:1.1.99.14]
GOM96_08410  glcF; glycolate oxidase subunit GlcF [KO:K11473] [EC:1.1.99.14]
GOM96_10645  katE; catalase HPII [KO:K03781] [EC:1.11.1.6]
GOM96_13305  catalase [KO:K03781] [EC:1.11.1.6]
GOM96_14930  2-hydroxyacid dehydrogenase [KO:K00018] [EC:1.1.1.29]
GOM96_12955  phosphoglycolate phosphatase [KO:K01091] [EC:3.1.3.18]
GOM96_05115  HAD-IA family hydrolase [KO:K01091] [EC:3.1.3.18]
GOM96_09795  glutamine synthetase [KO:K01915] [EC:6.3.1.2]
GOM96_09805  glutamine synthetase [KO:K01915] [EC:6.3.1.2]
GOM96_08910  glnA; type I glutamate--ammonia ligase [KO:K01915] [EC:6.3.1.2]
GOM96_13755  aminotransferase class I/II-fold pyridoxal phosphate-dependent enzyme [KO:K00600] [EC:2.1.2.1]
GOM96_00100  aminotransferase class I/II-fold pyridoxal phosphate-dependent enzyme [KO:K00600] [EC:2.1.2.1]
GOM96_00110  gcvP; aminomethyl-transferring glycine dehydrogenase [KO:K00281] [EC:1.4.4.2]
GOM96_09425  gcvT; glycine cleavage system aminomethyltransferase GcvT [KO:K00605] [EC:2.1.2.10]
GOM96_00090  gcvT; glycine cleavage system aminomethyltransferase GcvT [KO:K00605] [EC:2.1.2.10]
GOM96_00540  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
GOM96_09420  gcvH; glycine cleavage system protein GcvH [KO:K02437]
GOM96_11230  glycine cleavage system protein H [KO:K02437]
GOM96_00115  gcvH; glycine cleavage system protein GcvH [KO:K02437]
GOM96_06225  gcl; glyoxylate carboligase [KO:K01608] [EC:4.1.1.47]
GOM96_15735  TIM barrel protein [KO:K01816] [EC:5.3.1.22]
GOM96_06230  hyi; hydroxypyruvate isomerase [KO:K01816] [EC:5.3.1.22]
GOM96_06235  2-hydroxy-3-oxopropionate reductase [KO:K00042] [EC:1.1.1.60]
GOM96_06240  DUF4147 domain-containing protein [KO:K11529] [EC:2.7.1.165]
GOM96_07275  eda; bifunctional 4-hydroxy-2-oxoglutarate aldolase/2-dehydro-3-deoxy-phosphogluconate aldolase [KO:K01625] [EC:4.1.2.14 4.1.3.42]
GOM96_04105  eda; bifunctional 4-hydroxy-2-oxoglutarate aldolase/2-dehydro-3-deoxy-phosphogluconate aldolase [KO:K01625] [EC:4.1.2.14 4.1.3.42]
GOM96_11345  fdnG; formate dehydrogenase-N subunit alpha [KO:K00123] [EC:1.17.1.9]
GOM96_11340  fdxH; formate dehydrogenase subunit beta [KO:K00124]
GOM96_11335  formate dehydrogenase subunit gamma [KO:K00127]
GOM96_15145  purU; formyltetrahydrofolate deformylase [KO:K01433] [EC:3.5.1.10]
Compound
C00007  Oxygen
C00011  CO2
C00014  Ammonia
C00022  Pyruvate
C00024  Acetyl-CoA
C00025  L-Glutamate
C00026  2-Oxoglutarate
C00027  Hydrogen peroxide
C00033  Acetate
C00036  Oxaloacetate
C00037  Glycine
C00042  Succinate
C00048  Glyoxylate
C00058  Formate
C00064  L-Glutamine
C00065  L-Serine
C00091  Succinyl-CoA
C00100  Propanoyl-CoA
C00111  Glycerone phosphate
C00136  Butanoyl-CoA
C00149  (S)-Malate
C00158  Citrate
C00160  Glycolate
C00168  Hydroxypyruvate
C00197  3-Phospho-D-glycerate
C00209  Oxalate
C00258  D-Glycerate
C00266  Glycolaldehyde
C00311  Isocitrate
C00313  Oxalyl-CoA
C00332  Acetoacetyl-CoA
C00417  cis-Aconitate
C00552  meso-Tartaric acid
C00631  2-Phospho-D-glycerate
C00683  (S)-Methylmalonyl-CoA
C00798  Formyl-CoA
C00877  Crotonoyl-CoA
C00888  Pentanoyl-CoA
C00898  (R,R)-Tartaric acid
C00975  Dihydroxyfumarate
C00988  2-Phosphoglycolate
C01127  4-Hydroxy-2-oxoglutarate
C01146  2-Hydroxy-3-oxopropanoate
C01182  D-Ribulose 1,5-bisphosphate
C01213  (R)-Methylmalonyl-CoA
C01380  Ethylene glycol
C01732  Mesaconate
C01989  3-Ethylmalate
C01990  3-Oxalomalate
C02123  3-Propylmalate
C02405  Formyl phosphate
C03217  2-Hydroxy-3-oxoadipate
C03459  2-Hydroxy-3-oxosuccinate
C03548  trans-2,3-Epoxysuccinate
C03561  (R)-3-Hydroxybutanoyl-CoA
C03618  L-threo-3-Methylaspartate
C04348  L-Malyl-CoA
C06027  L-erythro-3-Methylmalyl-CoA
C06028  2-Methylfumaryl-CoA
C06049  N-Formylderivatives
C18026  (2S)-Ethylmalonyl-CoA
C18324  (2S)-Methylsuccinyl-CoA
C20238  (2R)-Ethylmalonyl-CoA
C22337  D-Ribulose 1-phosphate
Reference
PMID:10978349
  Authors
Njau RK, Herndon CA, Hawes JW.
  Title
Novel beta-hydroxyacid dehydrogenases in Escherichia coli and Haemophilus influenzae.
  Journal
J Biol Chem 275:38780-6 (2000)
DOI:10.1074/jbc.M007432200
Reference
PMID:18065535
  Authors
Zarzycki J, Schlichting A, Strychalsky N, Muller M, Alber BE, Fuchs G
  Title
Mesaconyl-coenzyme A hydratase, a new enzyme of two central carbon metabolic pathways in bacteria.
  Journal
J Bacteriol 190:1366-74 (2008)
DOI:10.1128/JB.01621-07
Reference
PMID:18819910
  Authors
Erb TJ, Retey J, Fuchs G, Alber BE
  Title
Ethylmalonyl-CoA mutase from Rhodobacter sphaeroides defines a new subclade of coenzyme B12-dependent acyl-CoA mutases.
  Journal
J Biol Chem 283:32283-93 (2008)
DOI:10.1074/jbc.M805527200
Reference
PMID:9596633
  Authors
Coschigano KT, Melo-Oliveira R, Lim J, Coruzzi GM
  Title
Arabidopsis gls mutants and distinct Fd-GOGAT genes. Implications for photorespiration and primary nitrogen assimilation.
  Journal
Plant Cell 10:741-52 (1998)
DOI:10.1105/tpc.10.5.741
Reference
PMID:16407450
  Authors
Masclaux-Daubresse C, Reisdorf-Cren M, Pageau K, Lelandais M, Grandjean O, Kronenberger J, Valadier MH, Feraud M, Jouglet T, Suzuki A
  Title
Glutamine synthetase-glutamate synthase pathway and glutamate dehydrogenase play distinct roles in the sink-source nitrogen cycle in tobacco.
  Journal
Plant Physiol 140:444-56 (2006)
DOI:10.1104/pp.105.071910
Reference
PMID:21252347
  Authors
Khomyakova M, Bukmez O, Thomas LK, Erb TJ, Berg IA
  Title
A methylaspartate cycle in haloarchaea.
  Journal
Science 331:334-7 (2011)
DOI:10.1126/science.1196544
Reference
PMID:11513957
  Authors
Serrano JA, Bonete MJ
  Title
Sequencing, phylogenetic and transcriptional analysis of the glyoxylate bypass operon (ace) in the halophilic archaeon Haloferax volcanii.
  Journal
Biochim Biophys Acta 1520:154-62 (2001)
DOI:10.1016/S0167-4781(01)00263-9
Related
pathway
sdeg00010  Glycolysis / Gluconeogenesis
sdeg00020  Citrate cycle (TCA cycle)
sdeg00030  Pentose phosphate pathway
sdeg00071  Fatty acid degradation
sdeg00230  Purine metabolism
sdeg00250  Alanine, aspartate and glutamate metabolism
sdeg00260  Glycine, serine and threonine metabolism
sdeg00620  Pyruvate metabolism
sdeg00710  Carbon fixation by Calvin cycle
sdeg00750  Vitamin B6 metabolism
sdeg00910  Nitrogen metabolism
KO pathway
ko00630   
LinkDB

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