KEGG   PATHWAY: sele00020
Entry
sele00020                   Pathway                                
Name
Citrate cycle (TCA cycle) - Selenomonas sp. oral taxon 478
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
sele00020  Citrate cycle (TCA cycle)
sele00020

Module
sele_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:sele00020]
sele_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:sele00020]
sele_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:sele00020]
Other DBs
GO: 0006099
Organism
Selenomonas sp. oral taxon 478 [GN:sele]
Gene
ADJ74_05130  2-oxoglutarate ferredoxin oxidoreductase subunit alpha [KO:K00174] [EC:1.2.7.3 1.2.7.11]
ADJ74_05125  2-oxoglutarate ferredoxin oxidoreductase subunit beta [KO:K00175] [EC:1.2.7.3 1.2.7.11]
ADJ74_05120  2-oxoglutarate ferredoxin oxidoreductase subunit gamma [KO:K00177] [EC:1.2.7.3]
ADJ74_05135  4Fe-4S ferredoxin [KO:K00176] [EC:1.2.7.3]
ADJ74_03335  succinyl-CoA synthetase subunit alpha [KO:K01902] [EC:6.2.1.5]
ADJ74_03330  sucC; succinyl-CoA synthetase subunit beta [KO:K01903] [EC:6.2.1.5]
ADJ74_02510  acetyl-CoA hydrolase [KO:K18118] [EC:2.8.3.18]
ADJ74_00810  sdhA; succinate dehydrogenase [KO:K00239] [EC:1.3.5.1]
ADJ74_02930  (2Fe-2S)-binding protein [KO:K00240] [EC:1.3.5.1]
ADJ74_00805  sdhB; succinate dehydrogenase [KO:K00240] [EC:1.3.5.1]
ADJ74_02935  heterodisulfide reductase subunit B [KO:K00241]
ADJ74_00815  succinate dehydrogenase [KO:K00241]
ADJ74_00825  fumarate hydratase [KO:K01677] [EC:4.2.1.2]
ADJ74_00820  fumarate hydratase [KO:K01678] [EC:4.2.1.2]
ADJ74_01545  fumarate hydratase [KO:K01679] [EC:4.2.1.2]
ADJ74_09195  malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
ADJ74_06800  phosphoenolpyruvate carboxykinase [KO:K01610] [EC:4.1.1.49]
ADJ74_00370  pyruvate-flavodoxin oxidoreductase [KO:K03737] [EC:1.2.7.1 1.2.7.-]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
sele00010  Glycolysis / Gluconeogenesis
sele00061  Fatty acid biosynthesis
sele00190  Oxidative phosphorylation
sele00220  Arginine biosynthesis
sele00250  Alanine, aspartate and glutamate metabolism
sele00280  Valine, leucine and isoleucine degradation
sele00350  Tyrosine metabolism
sele00470  D-Amino acid metabolism
sele00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

DBGET integrated database retrieval system