KEGG   PATHWAY: shis00630
Entry
shis00630                   Pathway                                
Name
Glyoxylate and dicarboxylate metabolism - Salvia hispanica (chia)
Class
Metabolism; Carbohydrate metabolism
Pathway map
shis00630  Glyoxylate and dicarboxylate metabolism
shis00630

Module
shis_M00012  Glyoxylate cycle [PATH:shis00630]
shis_M00532  Photorespiration [PATH:shis00630]
shis_M00621  Glycine cleavage system [PATH:shis00630]
Other DBs
GO: 0046487 0043648
Organism
Salvia hispanica (chia) [GN:shis]
Gene
125190439  isocitrate lyase-like [KO:K01637] [EC:4.1.3.1]
125193737  isocitrate lyase [KO:K01637] [EC:4.1.3.1]
125221616  acetyl-coenzyme A synthetase, chloroplastic/glyoxysomal [KO:K01895] [EC:6.2.1.1]
125217201  acetate--CoA ligase CCL3 [KO:K01913] [EC:6.2.1.1 6.2.1.2]
125193194  acetate--CoA ligase CCL3-like [KO:K01913] [EC:6.2.1.1 6.2.1.2]
125193955  malate synthase, glyoxysomal-like isoform X1 [KO:K01638] [EC:2.3.3.9]
125221298  malate synthase, glyoxysomal-like isoform X1 [KO:K01638] [EC:2.3.3.9]
125215338  malate synthase-like [KO:K01638] [EC:2.3.3.9]
125187721  malate dehydrogenase [KO:K00025] [EC:1.1.1.37]
125196231  malate dehydrogenase, cytoplasmic [KO:K00025] [EC:1.1.1.37]
125197520  malate dehydrogenase-like [KO:K00025] [EC:1.1.1.37]
125219533  malate dehydrogenase, cytoplasmic-like [KO:K00025] [EC:1.1.1.37]
125191911  malate dehydrogenase, glyoxysomal-like [KO:K00026] [EC:1.1.1.37]
125208839  malate dehydrogenase, chloroplastic-like [KO:K00026] [EC:1.1.1.37]
125210184  malate dehydrogenase, glyoxysomal [KO:K00026] [EC:1.1.1.37]
125212835  malate dehydrogenase, chloroplastic-like [KO:K00026] [EC:1.1.1.37]
125200973  malate dehydrogenase 1, mitochondrial-like [KO:K00026] [EC:1.1.1.37]
125213179  malate dehydrogenase, mitochondrial [KO:K00026] [EC:1.1.1.37]
125194484  citrate synthase, glyoxysomal-like [KO:K01647] [EC:2.3.3.1]
125195776  citrate synthase, glyoxysomal-like [KO:K01647] [EC:2.3.3.1]
125196486  citrate synthase, mitochondrial [KO:K01647] [EC:2.3.3.1]
125201655  citrate synthase, mitochondrial-like isoform X1 [KO:K01647] [EC:2.3.3.1]
125186669  aconitate hydratase, cytoplasmic [KO:K01681] [EC:4.2.1.3]
125193735  aconitate hydratase, cytoplasmic-like [KO:K01681] [EC:4.2.1.3]
125203286  aconitate hydratase, cytoplasmic-like [KO:K01681] [EC:4.2.1.3]
125187879  acetyl-CoA acetyltransferase, cytosolic 1 [KO:K00626] [EC:2.3.1.9]
125196454  acetyl-CoA acetyltransferase, cytosolic 1-like [KO:K00626] [EC:2.3.1.9]
125202763  acetyl-CoA acetyltransferase, cytosolic 1-like [KO:K00626] [EC:2.3.1.9]
125194394  glycolate oxidase [KO:K11517] [EC:1.1.3.15]
125195700  glycolate oxidase 1-like [KO:K11517] [EC:1.1.3.15]
125213351  glycolate oxidase 1 [KO:K11517] [EC:1.1.3.15]
125217835  catalase-like [KO:K03781] [EC:1.11.1.6]
125219009  catalase [KO:K03781] [EC:1.11.1.6]
125201192  catalase-like isoform X1 [KO:K03781] [EC:1.11.1.6]
125185214  glyoxylate/hydroxypyruvate reductase HPR3-like [KO:K15919] [EC:1.1.1.79 1.1.1.81]
125208496  glyoxylate/hydroxypyruvate reductase HPR3-like [KO:K15919] [EC:1.1.1.79 1.1.1.81]
125196377  glyoxylate/hydroxypyruvate reductase HPR3 [KO:K15919] [EC:1.1.1.79 1.1.1.81]
125188399  glyoxylate/succinic semialdehyde reductase 1 [KO:K18121] [EC:1.1.1.79 1.1.1.-]
125193039  glycerate dehydrogenase HPR, peroxisomal [KO:K15893] [EC:1.1.1.29]
125190179  phosphoglycolate phosphatase 2 [KO:K19269] [EC:3.1.3.18 3.1.3.48]
125212573  phosphoglycolate phosphatase 1A, chloroplastic-like [KO:K19269] [EC:3.1.3.18 3.1.3.48]
54110977  rbcL; ribulose-1,5-bisphosphate carboxylase/oxygenase large subunit [KO:K01601] [EC:4.1.1.39]
125213839  ribulose bisphosphate carboxylase large chain [KO:K01601] [EC:4.1.1.39]
125200979  ribulose bisphosphate carboxylase small subunit, chloroplastic-like isoform X1 [KO:K01602] [EC:4.1.1.39]
125200980  ribulose bisphosphate carboxylase small subunit, chloroplastic-like [KO:K01602] [EC:4.1.1.39]
125214488  ribulose bisphosphate carboxylase small subunit, chloroplastic-like [KO:K01602] [EC:4.1.1.39]
125215219  ribulose bisphosphate carboxylase small subunit, chloroplastic-like [KO:K01602] [EC:4.1.1.39]
125215726  serine--glyoxylate aminotransferase [KO:K00830] [EC:2.6.1.44 2.6.1.45 2.6.1.51]
125223183  serine--glyoxylate aminotransferase-like [KO:K00830] [EC:2.6.1.44 2.6.1.45 2.6.1.51]
125203324  glutamate--glyoxylate aminotransferase 2-like [KO:K14272] [EC:2.6.1.4 2.6.1.2 2.6.1.44]
125203325  glutamate--glyoxylate aminotransferase 2 [KO:K14272] [EC:2.6.1.4 2.6.1.2 2.6.1.44]
125196665  ferredoxin-dependent glutamate synthase, chloroplastic-like [KO:K00284] [EC:1.4.7.1]
125196233  glutamine synthetase [KO:K01915] [EC:6.3.1.2]
125212375  glutamine synthetase cytosolic isozyme 2-like [KO:K01915] [EC:6.3.1.2]
125201302  glutamine synthetase cytosolic isozyme [KO:K01915] [EC:6.3.1.2]
125214104  glutamine synthetase cytosolic isozyme-like [KO:K01915] [EC:6.3.1.2]
125214105  glutamine synthetase cytosolic isozyme-like [KO:K01915] [EC:6.3.1.2]
125222952  glutamine synthetase, chloroplastic [KO:K01915] [EC:6.3.1.2]
125194130  serine hydroxymethyltransferase 4-like [KO:K00600] [EC:2.1.2.1]
125195856  serine hydroxymethyltransferase 4 [KO:K00600] [EC:2.1.2.1]
125211330  serine hydroxymethyltransferase 3, chloroplastic-like [KO:K00600] [EC:2.1.2.1]
125199271  serine hydroxymethyltransferase 3, chloroplastic-like [KO:K00600] [EC:2.1.2.1]
125213438  serine hydroxymethyltransferase 6-like [KO:K00600] [EC:2.1.2.1]
125221769  serine hydroxymethyltransferase 2, mitochondrial [KO:K00600] [EC:2.1.2.1]
125201788  serine hydroxymethyltransferase, mitochondrial [KO:K00600] [EC:2.1.2.1]
125213784  serine hydroxymethyltransferase 3, chloroplastic-like [KO:K00600] [EC:2.1.2.1]
125187808  glycine dehydrogenase (decarboxylating), mitochondrial [KO:K00281] [EC:1.4.4.2]
125195658  glycine dehydrogenase (decarboxylating), mitochondrial-like [KO:K00281] [EC:1.4.4.2]
125188989  aminomethyltransferase, mitochondrial [KO:K00605] [EC:2.1.2.10]
125204360  aminomethyltransferase, mitochondrial [KO:K00605] [EC:2.1.2.10]
125185625  dihydrolipoyl dehydrogenase 2, chloroplastic-like [KO:K00382] [EC:1.8.1.4]
125204816  dihydrolipoyl dehydrogenase, mitochondrial-like [KO:K00382] [EC:1.8.1.4]
125205348  dihydrolipoyl dehydrogenase 1, mitochondrial-like [KO:K00382] [EC:1.8.1.4]
125205643  dihydrolipoyl dehydrogenase 2, chloroplastic-like [KO:K00382] [EC:1.8.1.4]
125193974  dihydrolipoyl dehydrogenase 2, chloroplastic-like [KO:K00382] [EC:1.8.1.4]
125214654  dihydrolipoyl dehydrogenase 1, mitochondrial [KO:K00382] [EC:1.8.1.4]
125187265  glycine cleavage system H protein, mitochondrial-like [KO:K02437]
125207260  glycine cleavage system H protein 2, mitochondrial-like [KO:K02437]
125212607  glycine cleavage system H protein, mitochondrial-like [KO:K02437]
125215095  glycine cleavage system H protein 2, mitochondrial-like [KO:K02437]
125204131  glycine cleavage system H protein 2, mitochondrial-like [KO:K02437]
125212067  D-glycerate 3-kinase, chloroplastic [KO:K15918] [EC:2.7.1.31]
125199136  formate dehydrogenase, mitochondrial [KO:K00122] [EC:1.17.1.9]
125214856  formamidase-like isoform X1 [KO:K01455] [EC:3.5.1.49]
125186398  probable CoA ligase CCL9 [KO:K22133] [EC:6.2.1.8]
125213895  probable CoA ligase CCL9 [KO:K22133] [EC:6.2.1.8]
Compound
C00007  Oxygen
C00011  CO2
C00014  Ammonia
C00022  Pyruvate
C00024  Acetyl-CoA
C00025  L-Glutamate
C00026  2-Oxoglutarate
C00027  Hydrogen peroxide
C00033  Acetate
C00036  Oxaloacetate
C00037  Glycine
C00042  Succinate
C00048  Glyoxylate
C00058  Formate
C00064  L-Glutamine
C00065  L-Serine
C00091  Succinyl-CoA
C00100  Propanoyl-CoA
C00111  Glycerone phosphate
C00136  Butanoyl-CoA
C00149  (S)-Malate
C00158  Citrate
C00160  Glycolate
C00168  Hydroxypyruvate
C00197  3-Phospho-D-glycerate
C00209  Oxalate
C00258  D-Glycerate
C00266  Glycolaldehyde
C00311  Isocitrate
C00313  Oxalyl-CoA
C00332  Acetoacetyl-CoA
C00417  cis-Aconitate
C00552  meso-Tartaric acid
C00631  2-Phospho-D-glycerate
C00683  (S)-Methylmalonyl-CoA
C00798  Formyl-CoA
C00877  Crotonoyl-CoA
C00888  Pentanoyl-CoA
C00898  (R,R)-Tartaric acid
C00975  Dihydroxyfumarate
C00988  2-Phosphoglycolate
C01127  4-Hydroxy-2-oxoglutarate
C01146  2-Hydroxy-3-oxopropanoate
C01182  D-Ribulose 1,5-bisphosphate
C01213  (R)-Methylmalonyl-CoA
C01380  Ethylene glycol
C01732  Mesaconate
C01989  3-Ethylmalate
C01990  3-Oxalomalate
C02123  3-Propylmalate
C02405  Formyl phosphate
C03217  2-Hydroxy-3-oxoadipate
C03459  2-Hydroxy-3-oxosuccinate
C03548  trans-2,3-Epoxysuccinate
C03561  (R)-3-Hydroxybutanoyl-CoA
C03618  L-threo-3-Methylaspartate
C04348  L-Malyl-CoA
C06027  L-erythro-3-Methylmalyl-CoA
C06028  2-Methylfumaryl-CoA
C06049  N-Formylderivatives
C18026  (2S)-Ethylmalonyl-CoA
C18324  (2S)-Methylsuccinyl-CoA
C20238  (2R)-Ethylmalonyl-CoA
C22337  D-Ribulose 1-phosphate
Reference
PMID:10978349
  Authors
Njau RK, Herndon CA, Hawes JW.
  Title
Novel beta-hydroxyacid dehydrogenases in Escherichia coli and Haemophilus influenzae.
  Journal
J Biol Chem 275:38780-6 (2000)
DOI:10.1074/jbc.M007432200
Reference
PMID:18065535
  Authors
Zarzycki J, Schlichting A, Strychalsky N, Muller M, Alber BE, Fuchs G
  Title
Mesaconyl-coenzyme A hydratase, a new enzyme of two central carbon metabolic pathways in bacteria.
  Journal
J Bacteriol 190:1366-74 (2008)
DOI:10.1128/JB.01621-07
Reference
PMID:18819910
  Authors
Erb TJ, Retey J, Fuchs G, Alber BE
  Title
Ethylmalonyl-CoA mutase from Rhodobacter sphaeroides defines a new subclade of coenzyme B12-dependent acyl-CoA mutases.
  Journal
J Biol Chem 283:32283-93 (2008)
DOI:10.1074/jbc.M805527200
Reference
PMID:9596633
  Authors
Coschigano KT, Melo-Oliveira R, Lim J, Coruzzi GM
  Title
Arabidopsis gls mutants and distinct Fd-GOGAT genes. Implications for photorespiration and primary nitrogen assimilation.
  Journal
Plant Cell 10:741-52 (1998)
DOI:10.1105/tpc.10.5.741
Reference
PMID:16407450
  Authors
Masclaux-Daubresse C, Reisdorf-Cren M, Pageau K, Lelandais M, Grandjean O, Kronenberger J, Valadier MH, Feraud M, Jouglet T, Suzuki A
  Title
Glutamine synthetase-glutamate synthase pathway and glutamate dehydrogenase play distinct roles in the sink-source nitrogen cycle in tobacco.
  Journal
Plant Physiol 140:444-56 (2006)
DOI:10.1104/pp.105.071910
Reference
PMID:21252347
  Authors
Khomyakova M, Bukmez O, Thomas LK, Erb TJ, Berg IA
  Title
A methylaspartate cycle in haloarchaea.
  Journal
Science 331:334-7 (2011)
DOI:10.1126/science.1196544
Reference
PMID:11513957
  Authors
Serrano JA, Bonete MJ
  Title
Sequencing, phylogenetic and transcriptional analysis of the glyoxylate bypass operon (ace) in the halophilic archaeon Haloferax volcanii.
  Journal
Biochim Biophys Acta 1520:154-62 (2001)
DOI:10.1016/S0167-4781(01)00263-9
Related
pathway
shis00010  Glycolysis / Gluconeogenesis
shis00020  Citrate cycle (TCA cycle)
shis00030  Pentose phosphate pathway
shis00053  Ascorbate and aldarate metabolism
shis00071  Fatty acid degradation
shis00230  Purine metabolism
shis00250  Alanine, aspartate and glutamate metabolism
shis00260  Glycine, serine and threonine metabolism
shis00620  Pyruvate metabolism
shis00710  Carbon fixation by Calvin cycle
shis00750  Vitamin B6 metabolism
shis00910  Nitrogen metabolism
KO pathway
ko00630   
LinkDB

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