KEGG   PATHWAY: sid00020
Entry
sid00020                    Pathway                                
Name
Citrate cycle (TCA cycle) - Sulfolobus islandicus M.16.4
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
sid00020  Citrate cycle (TCA cycle)
sid00020

Module
sid_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:sid00020]
sid_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:sid00020]
sid_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:sid00020]
sid_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:sid00020]
sid_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:sid00020]
Other DBs
GO: 0006099
Organism
Sulfolobus islandicus M.16.4 [GN:sid]
Gene
M164_2706  2-methylcitrate synthase/citrate synthase II [KO:K01647] [EC:2.3.3.1]
M164_1121  aconitate hydratase 1 [KO:K01681] [EC:4.2.1.3]
M164_2781  isocitrate dehydrogenase, NADP-dependent [KO:K00031] [EC:1.1.1.42]
M164_2728  FAD-dependent pyridine nucleotide-disulphideoxido reductase [KO:K00382] [EC:1.8.1.4]
M164_1095  FAD-dependent pyridine nucleotide-disulphideoxido reductase [KO:K00382] [EC:1.8.1.4]
M164_0857  FAD-dependent pyridine nucleotide-disulphideoxido reductase [KO:K00382] [EC:1.8.1.4]
M164_2479  pyruvate flavodoxin/ferredoxin oxidoreductase domain protein [KO:K00174] [EC:1.2.7.3 1.2.7.11]
M164_2478  pyruvate ferredoxin/flavodoxin oxidoreductase, beta subunit [KO:K00175] [EC:1.2.7.3 1.2.7.11]
M164_0294  ATP-citrate lyase/succinyl-CoA ligase [KO:K01902] [EC:6.2.1.5]
M164_0293  Succinate--CoA ligase (ADP-forming) [KO:K01903] [EC:6.2.1.5]
M164_0174  succinate dehydrogenase or fumarate reductase,flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
M164_0175  succinate dehydrogenase and fumarate reductase iron-sulfur protein [KO:K00240] [EC:1.3.5.1]
M164_0176  CoB--CoM heterodisulfide reductase [KO:K00241]
M164_0177  succinate dehydrogenase subunit D (SdhD) [KO:K18859]
M164_1136  fumarate lyase [KO:K01679] [EC:4.2.1.2]
M164_2710  Lactate/malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
M164_0433  Phosphoenolpyruvate carboxykinase (GTP) [KO:K01596] [EC:4.1.1.32]
M164_0861  catalytic domain of components of variousde hydrogenase complexes [KO:K00627] [EC:2.3.1.12]
M164_0365  pyruvate flavodoxin/ferredoxin oxidoreductase domain protein [KO:K00169] [EC:1.2.7.1]
M164_2552  pyruvate flavodoxin/ferredoxin oxidoreductase domain protein [KO:K00169] [EC:1.2.7.1]
M164_2553  thiamine pyrophosphate protein domain protein TPP-binding [KO:K00170] [EC:1.2.7.1]
M164_0364  thiamine pyrophosphate protein domain protein TPP-binding [KO:K00170] [EC:1.2.7.1]
M164_0395  thiamine pyrophosphate protein domain protein TPP-binding [KO:K00170] [EC:1.2.7.1]
M164_0398  pyruvate/ketoisovalerate oxidoreductase, gamma subunit [KO:K00172] [EC:1.2.7.1]
M164_2550  pyruvate/ketoisovalerate oxidoreductase, gamma subunit [KO:K00172] [EC:1.2.7.1]
M164_2551  pyruvate ferredoxin/flavodoxin oxidoreductase, delta subunit [KO:K00171] [EC:1.2.7.1]
M164_2843  pyruvate ferredoxin, flavodoxin oxidoreductase, delta subunit [KO:K00171] [EC:1.2.7.1]
M164_0397  pyruvate ferredoxin/flavodoxin oxidoreductase, delta subunit [KO:K00171] [EC:1.2.7.1]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
sid00010  Glycolysis / Gluconeogenesis
sid00053  Ascorbate and aldarate metabolism
sid00061  Fatty acid biosynthesis
sid00071  Fatty acid degradation
sid00190  Oxidative phosphorylation
sid00220  Arginine biosynthesis
sid00250  Alanine, aspartate and glutamate metabolism
sid00280  Valine, leucine and isoleucine degradation
sid00350  Tyrosine metabolism
sid00470  D-Amino acid metabolism
sid00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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