KEGG   PATHWAY: sih00020
Entry
sih00020                    Pathway                                
Name
Citrate cycle (TCA cycle) - Sulfolobus islandicus HVE10/4
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
sih00020  Citrate cycle (TCA cycle)
sih00020

Module
sih_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:sih00020]
sih_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:sih00020]
sih_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:sih00020]
sih_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:sih00020]
sih_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:sih00020]
Other DBs
GO: 0006099
Organism
Sulfolobus islandicus HVE10/4 [GN:sih]
Gene
SiH_2681  2-methylcitrate synthase/citrate synthase II [KO:K01647] [EC:2.3.3.1]
SiH_1092  aconitate hydratase 1 [KO:K01681] [EC:4.2.1.3]
SiH_2759  isocitrate dehydrogenase, NADP-dependent [KO:K00031] [EC:1.1.1.42]
SiH_0586  FAD-dependent pyridine nucleotide-disulfide oxidoreductase [KO:K00382] [EC:1.8.1.4]
SiH_1066  FAD-dependent pyridine nucleotide-disulfide oxidoreductase [KO:K00382] [EC:1.8.1.4]
SiH_2703  FAD-dependent pyridine nucleotide-disulphideoxido reductase [KO:K00382] [EC:1.8.1.4]
SiH_2425  pyruvate flavodoxin/ferredoxin oxidoreductase domain protein [KO:K00174] [EC:1.2.7.3 1.2.7.11]
SiH_2424  pyruvate ferredoxin/flavodoxin oxidoreductase, beta subunit [KO:K00175] [EC:1.2.7.3 1.2.7.11]
SiH_0281  ATP-citrate lyase/succinyl-CoA ligase [KO:K01902] [EC:6.2.1.5]
SiH_0282  Succinate--CoA ligase (ADP-forming) [KO:K01903] [EC:6.2.1.5]
SiH_0159  succinate dehydrogenase or fumarate reductase,flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
SiH_0160  succinate dehydrogenase and fumarate reductase iron-sulfur protein [KO:K00240] [EC:1.3.5.1]
SiH_0161  CoB-CoM heterodisulfide reductase [KO:K00241]
SiH_0162  succinate dehydrogenase subunit D (SdhD) [KO:K18859]
SiH_1107  fumarate lyase [KO:K01679] [EC:4.2.1.2]
SiH_2685  Lactate/malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
SiH_0993  Phosphoenolpyruvate carboxykinase (GTP) [KO:K01596] [EC:4.1.1.32]
SiH_0582  dehydrogenase complex, dihydrolipoamide acyltransferase [KO:K00627] [EC:2.3.1.12]
SiH_0346  pyruvate flavodoxin/ferredoxin oxidoreductase domain protein [KO:K00169] [EC:1.2.7.1]
SiH_2505  pyruvate flavodoxin/ferredoxin oxidoreductase domain protein [KO:K00169] [EC:1.2.7.1]
SiH_0372  thiamine pyrophosphate protein domain protein TPP-binding protein [KO:K00170] [EC:1.2.7.1]
SiH_0345  thiamine pyrophosphate protein domain protein TPP-binding protein [KO:K00170] [EC:1.2.7.1]
SiH_2506  thiamine pyrophosphate protein domain protein TPP-binding protein [KO:K00170] [EC:1.2.7.1]
SiH_0375  pyruvate/ketoisovalerate oxidoreductase, gamma subunit [KO:K00172] [EC:1.2.7.1]
SiH_2503  pyruvate/ketoisovalerate oxidoreductase, gamma subunit [KO:K00172] [EC:1.2.7.1]
SiH_2504  pyruvate ferredoxin/flavodoxin oxidoreductase, delta subunit [KO:K00171] [EC:1.2.7.1]
SiH_0347  pyruvate ferredoxin, flavodoxin oxidoreductase, delta subunit [KO:K00171] [EC:1.2.7.1]
SiH_0374  pyruvate ferredoxin/flavodoxin oxidoreductase, delta subunit [KO:K00171] [EC:1.2.7.1]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
sih00010  Glycolysis / Gluconeogenesis
sih00053  Ascorbate and aldarate metabolism
sih00061  Fatty acid biosynthesis
sih00071  Fatty acid degradation
sih00190  Oxidative phosphorylation
sih00220  Arginine biosynthesis
sih00250  Alanine, aspartate and glutamate metabolism
sih00280  Valine, leucine and isoleucine degradation
sih00350  Tyrosine metabolism
sih00470  D-Amino acid metabolism
sih00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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