KEGG   PATHWAY: sii00020
Entry
sii00020                    Pathway                                
Name
Citrate cycle (TCA cycle) - Sulfolobus islandicus L.D.8.5
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
sii00020  Citrate cycle (TCA cycle)
sii00020

Module
sii_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:sii00020]
sii_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:sii00020]
sii_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:sii00020]
sii_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:sii00020]
sii_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:sii00020]
Other DBs
GO: 0006099
Organism
Sulfolobus islandicus L.D.8.5 [GN:sii]
Gene
LD85_3047  2-methylcitrate synthase/citrate synthase II [KO:K01647] [EC:2.3.3.1]
LD85_1248  aconitate hydratase 1 [KO:K01681] [EC:4.2.1.3]
LD85_3130  isocitrate dehydrogenase, NADP-dependent [KO:K00031] [EC:1.1.1.42]
LD85_1012  FAD-dependent pyridine nucleotide-disulphide oxidoreductase [KO:K00382] [EC:1.8.1.4]
LD85_1222  FAD-dependent pyridine nucleotide-disulphide oxidoreductase [KO:K00382] [EC:1.8.1.4]
LD85_3071  FAD-dependent pyridine nucleotide-disulphide oxidoreductase [KO:K00382] [EC:1.8.1.4]
LD85_2802  pyruvate flavodoxin/ferredoxin oxidoreductase domain protein [KO:K00174] [EC:1.2.7.3 1.2.7.11]
LD85_2801  pyruvate ferredoxin/flavodoxin oxidoreductase, beta subunit [KO:K00175] [EC:1.2.7.3 1.2.7.11]
LD85_0280  ATP-citrate lyase/succinyl-CoA ligase [KO:K01902] [EC:6.2.1.5]
LD85_0281  Succinate--CoA ligase (ADP-forming) [KO:K01903] [EC:6.2.1.5]
LD85_0159  succinate dehydrogenase or fumarate reductase, flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
LD85_0160  succinate dehydrogenase or fumarate reductase iron-sulfur protein [KO:K00240] [EC:1.3.5.1]
LD85_0161  CoB--CoM heterodisulfide reductase [KO:K00241]
LD85_0162  succinate dehydrogenase subunit D [KO:K18859]
LD85_1263  fumarate lyase [KO:K01679] [EC:4.2.1.2]
LD85_3051  conserved hypothetical protein [KO:K00024] [EC:1.1.1.37]
LD85_0424  Phosphoenolpyruvate carboxykinase (GTP) [KO:K01596] [EC:4.1.1.32]
LD85_1007  catalytic domain of components of various dehydrogenase complexes [KO:K00627] [EC:2.3.1.12]
LD85_0351  hypothetical protein [KO:K00169] [EC:1.2.7.1]
LD85_2878  pyruvate flavodoxin/ferredoxin oxidoreductase domain protein [KO:K00169] [EC:1.2.7.1]
LD85_0350  hypothetical protein [KO:K00170] [EC:1.2.7.1]
LD85_0383  thiamine pyrophosphate enzyme domain protein TPP-binding protein [KO:K00170] [EC:1.2.7.1]
LD85_2879  thiamine pyrophosphate enzyme domain protein TPP-binding protein [KO:K00170] [EC:1.2.7.1]
LD85_0386  pyruvate/ketoisovalerate oxidoreductase, gamma subunit [KO:K00172] [EC:1.2.7.1]
LD85_2876  pyruvate/ketoisovalerate oxidoreductase, gamma subunit [KO:K00172] [EC:1.2.7.1]
LD85_2877  pyruvate ferredoxin/flavodoxin oxidoreductase, delta subunit [KO:K00171] [EC:1.2.7.1]
LD85_0352  hypothetical protein [KO:K00171] [EC:1.2.7.1]
LD85_0385  pyruvate ferredoxin/flavodoxin oxidoreductase, delta subunit [KO:K00171] [EC:1.2.7.1]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
sii00010  Glycolysis / Gluconeogenesis
sii00053  Ascorbate and aldarate metabolism
sii00061  Fatty acid biosynthesis
sii00071  Fatty acid degradation
sii00190  Oxidative phosphorylation
sii00220  Arginine biosynthesis
sii00250  Alanine, aspartate and glutamate metabolism
sii00280  Valine, leucine and isoleucine degradation
sii00350  Tyrosine metabolism
sii00470  D-Amino acid metabolism
sii00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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