KEGG   PATHWAY: sim00020
Entry
sim00020                    Pathway                                
Name
Citrate cycle (TCA cycle) - Sulfolobus islandicus M.16.27
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
sim00020  Citrate cycle (TCA cycle)
sim00020

Module
sim_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:sim00020]
sim_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:sim00020]
sim_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:sim00020]
sim_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:sim00020]
sim_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:sim00020]
Other DBs
GO: 0006099
Organism
Sulfolobus islandicus M.16.27 [GN:sim]
Gene
M1627_2775  2-methylcitrate synthase/citrate synthase II [KO:K01647] [EC:2.3.3.1]
M1627_1195  aconitate hydratase 1 [KO:K01681] [EC:4.2.1.3]
M1627_0897  aconitate hydratase domain protein [KO:K01681] [EC:4.2.1.3]
M1627_2852  isocitrate dehydrogenase, NADP-dependent [KO:K00031] [EC:1.1.1.42]
M1627_1169  FAD-dependent pyridine nucleotide-disulphide oxidoreductase [KO:K00382] [EC:1.8.1.4]
M1627_0854  FAD-dependent pyridine nucleotide-disulphide oxidoreductase [KO:K00382] [EC:1.8.1.4]
M1627_2798  FAD-dependent pyridine nucleotide-disulphide oxidoreductase [KO:K00382] [EC:1.8.1.4]
M1627_2550  pyruvate flavodoxin/ferredoxin oxidoreductase domain protein [KO:K00174] [EC:1.2.7.3 1.2.7.11]
M1627_2549  pyruvate ferredoxin/flavodoxin oxidoreductase, beta subunit [KO:K00175] [EC:1.2.7.3 1.2.7.11]
M1627_0276  ATP-citrate lyase/succinyl-CoA ligase [KO:K01902] [EC:6.2.1.5]
M1627_0275  Succinate--CoA ligase (ADP-forming) [KO:K01903] [EC:6.2.1.5]
M1627_0155  succinate dehydrogenase or fumarate reductase, flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
M1627_0156  succinate dehydrogenase and fumarate reductase iron-sulfur protein [KO:K00240] [EC:1.3.5.1]
M1627_0157  CoB--CoM heterodisulfide reductase [KO:K00241]
M1627_0158  succinate dehydrogenase subunit D (SdhD) [KO:K18859]
M1627_1210  fumarate lyase [KO:K01679] [EC:4.2.1.2]
M1627_2779  Lactate/malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
M1627_0409  Phosphoenolpyruvate carboxykinase (GTP) [KO:K01596] [EC:4.1.1.32]
M1627_0858  catalytic domain of components of various dehydrogenase complexes [KO:K00627] [EC:2.3.1.12]
M1627_0345  pyruvate flavodoxin/ferredoxin oxidoreductase domain protein [KO:K00169] [EC:1.2.7.1]
M1627_2621  pyruvate flavodoxin/ferredoxin oxidoreductase domain protein [KO:K00169] [EC:1.2.7.1]
M1627_2622  thiamine pyrophosphate protein domain protein TPP-binding [KO:K00170] [EC:1.2.7.1]
M1627_0379  thiamine pyrophosphate protein domain protein TPP-binding [KO:K00170] [EC:1.2.7.1]
M1627_0344  thiamine pyrophosphate protein domain protein TPP-binding [KO:K00170] [EC:1.2.7.1]
M1627_0382  pyruvate/ketoisovalerate oxidoreductase, gamma subunit [KO:K00172] [EC:1.2.7.1]
M1627_2619  pyruvate/ketoisovalerate oxidoreductase, gamma subunit [KO:K00172] [EC:1.2.7.1]
M1627_2620  pyruvate ferredoxin/flavodoxin oxidoreductase, delta subunit [KO:K00171] [EC:1.2.7.1]
M1627_0346  pyruvate ferredoxin/flavodoxin oxidoreductase, delta subunit [KO:K00171] [EC:1.2.7.1]
M1627_0381  pyruvate ferredoxin/flavodoxin oxidoreductase, delta subunit [KO:K00171] [EC:1.2.7.1]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
sim00010  Glycolysis / Gluconeogenesis
sim00053  Ascorbate and aldarate metabolism
sim00061  Fatty acid biosynthesis
sim00071  Fatty acid degradation
sim00190  Oxidative phosphorylation
sim00220  Arginine biosynthesis
sim00250  Alanine, aspartate and glutamate metabolism
sim00280  Valine, leucine and isoleucine degradation
sim00350  Tyrosine metabolism
sim00470  D-Amino acid metabolism
sim00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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