KEGG   PATHWAY: sin00020
Entry
sin00020                    Pathway                                
Name
Citrate cycle (TCA cycle) - Sulfolobus islandicus Y.N.15.51
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
sin00020  Citrate cycle (TCA cycle)
sin00020

Module
sin_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:sin00020]
sin_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:sin00020]
sin_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:sin00020]
sin_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:sin00020]
sin_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:sin00020]
Other DBs
GO: 0006099
Organism
Sulfolobus islandicus Y.N.15.51 [GN:sin]
Gene
YN1551_3088  2-methylcitrate synthase/citrate synthase II [KO:K01647] [EC:2.3.3.1]
YN1551_1731  aconitate hydratase 1 [KO:K01681] [EC:4.2.1.3]
YN1551_2083  aconitate hydratase domain protein [KO:K01681] [EC:4.2.1.3]
YN1551_3171  isocitrate dehydrogenase, NADP-dependent [KO:K00031] [EC:1.1.1.42]
YN1551_2049  FAD-dependent pyridine nucleotide-disulphideoxido reductase [KO:K00382] [EC:1.8.1.4]
YN1551_3112  FAD-dependent pyridine nucleotide-disulphideoxido reductase [KO:K00382] [EC:1.8.1.4]
YN1551_1757  FAD-dependent pyridine nucleotide-disulphideoxido reductase [KO:K00382] [EC:1.8.1.4]
YN1551_0267  pyruvate flavodoxin/ferredoxin oxidoreductase domain protein [KO:K00174] [EC:1.2.7.3 1.2.7.11]
YN1551_0268  pyruvate ferredoxin/flavodoxin oxidoreductase, beta subunit [KO:K00175] [EC:1.2.7.3 1.2.7.11]
YN1551_2883  ATP-citrate lyase/succinyl-CoA ligase [KO:K01902] [EC:6.2.1.5]
YN1551_2884  Succinate--CoA ligase (ADP-forming) [KO:K01903] [EC:6.2.1.5]
YN1551_2759  succinate dehydrogenase or fumarate reductase, flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
YN1551_2760  succinate dehydrogenase and fumarate reductase iron-sulfur protein [KO:K00240] [EC:1.3.5.1]
YN1551_2761  CoB--CoM heterodisulfide reductase [KO:K00241]
YN1551_2762  succinate dehydrogenase subunit D (SdhD) [KO:K18859]
YN1551_1709  fumarate lyase [KO:K01679] [EC:4.2.1.2]
YN1551_3092  Lactate/malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
YN1551_2639  Phosphoenolpyruvate carboxykinase (GTP) [KO:K01596] [EC:4.1.1.32]
YN1551_2054  catalytic domain of components of various dehydrogenase complexes [KO:K00627] [EC:2.3.1.12]
YN1551_0158  pyruvate flavodoxin/ferredoxin oxidoreductase domain protein [KO:K00169] [EC:1.2.7.1]
YN1551_2710  pyruvate flavodoxin/ferredoxin oxidoreductase domain protein [KO:K00169] [EC:1.2.7.1]
YN1551_0157  thiamine pyrophosphate protein domain protein TPP-binding [KO:K00170] [EC:1.2.7.1]
YN1551_2682  thiamine pyrophosphate protein domain protein TPP-binding [KO:K00170] [EC:1.2.7.1]
YN1551_2711  thiamine pyrophosphate protein domain protein TPP-binding [KO:K00170] [EC:1.2.7.1]
YN1551_2679  pyruvate/ketoisovalerate oxidoreductase, gamma subunit [KO:K00172] [EC:1.2.7.1]
YN1551_0160  pyruvate/ketoisovalerate oxidoreductase, gamma subunit [KO:K00172] [EC:1.2.7.1]
YN1551_0159  pyruvate ferredoxin/flavodoxin oxidoreductase, delta subunit [KO:K00171] [EC:1.2.7.1]
YN1551_2680  pyruvate ferredoxin/flavodoxin oxidoreductase, delta subunit [KO:K00171] [EC:1.2.7.1]
YN1551_2709  pyruvate ferredoxin/flavodoxin oxidoreductase, delta subunit [KO:K00171] [EC:1.2.7.1]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
sin00010  Glycolysis / Gluconeogenesis
sin00053  Ascorbate and aldarate metabolism
sin00061  Fatty acid biosynthesis
sin00071  Fatty acid degradation
sin00190  Oxidative phosphorylation
sin00220  Arginine biosynthesis
sin00250  Alanine, aspartate and glutamate metabolism
sin00280  Valine, leucine and isoleucine degradation
sin00350  Tyrosine metabolism
sin00470  D-Amino acid metabolism
sin00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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