KEGG   PATHWAY: sinu00020
Entry
sinu00020                   Pathway                                
Name
Citrate cycle (TCA cycle) - Sulfurovum indicum
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
sinu00020  Citrate cycle (TCA cycle)
sinu00020

Module
sinu_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:sinu00020]
sinu_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:sinu00020]
sinu_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:sinu00020]
sinu_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:sinu00020]
sinu_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:sinu00020]
Other DBs
GO: 0006099
Organism
Sulfurovum indicum [GN:sinu]
Gene
IMZ28_00445  citrate synthase [KO:K01647] [EC:2.3.3.1]
IMZ28_08250  ATP citrate synthase [KO:K15230] [EC:2.3.3.8]
IMZ28_08255  ATPase [KO:K15231] [EC:2.3.3.8]
IMZ28_06860  bifunctional aconitate hydratase 2/2-methylisocitrate dehydratase [KO:K01682] [EC:4.2.1.3 4.2.1.99]
IMZ28_08090  NADP-dependent isocitrate dehydrogenase [KO:K00031] [EC:1.1.1.42]
IMZ28_08050  2-oxoglutarate synthase subunit alpha [KO:K00174] [EC:1.2.7.3 1.2.7.11]
IMZ28_05230  2-oxoacid ferredoxin oxidoreductase [KO:K00175] [EC:1.2.7.3 1.2.7.11]
IMZ28_08045  2-oxoglutarate ferredoxin oxidoreductase subunit beta [KO:K00175] [EC:1.2.7.3 1.2.7.11]
IMZ28_08040  2-oxoacid:acceptor oxidoreductase family protein [KO:K00177] [EC:1.2.7.3]
IMZ28_08055  4Fe-4S binding protein [KO:K00176] [EC:1.2.7.3]
IMZ28_08065  sucD; succinate--CoA ligase subunit alpha [KO:K01902] [EC:6.2.1.5]
IMZ28_08070  sucC; ADP-forming succinate--CoA ligase subunit beta [KO:K01903] [EC:6.2.1.5]
IMZ28_05740  FAD-binding protein [KO:K00239] [EC:1.3.5.1]
IMZ28_05745  sdhB; succinate dehydrogenase iron-sulfur subunit [KO:K00240] [EC:1.3.5.1]
IMZ28_05750  CoB--CoM heterodisulfide reductase iron-sulfur subunit B family protein [KO:K00241]
IMZ28_08075  fumC; class II fumarate hydratase [KO:K01679] [EC:4.2.1.2]
IMZ28_08080  malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
IMZ28_08085  malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
IMZ28_08860  FAD-dependent oxidoreductase [KO:K00116] [EC:1.1.5.4]
IMZ28_07420  accC; acetyl-CoA carboxylase biotin carboxylase subunit [KO:K01959] [EC:6.4.1.1]
IMZ28_04510  biotin/lipoyl-binding protein [KO:K01960] [EC:6.4.1.1]
IMZ28_04520  pckA; phosphoenolpyruvate carboxykinase (ATP) [KO:K01610] [EC:4.1.1.49]
IMZ28_09835  2-oxoacid:ferredoxin oxidoreductase subunit alpha [KO:K00169] [EC:1.2.7.1]
IMZ28_09830  pyruvate ferredoxin oxidoreductase [KO:K00170] [EC:1.2.7.1]
IMZ28_09845  pyruvate flavodoxin oxidoreductase subunit gamma [KO:K00172] [EC:1.2.7.1]
IMZ28_09840  4Fe-4S dicluster domain-containing protein [KO:K00171] [EC:1.2.7.1]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
sinu00010  Glycolysis / Gluconeogenesis
sinu00053  Ascorbate and aldarate metabolism
sinu00061  Fatty acid biosynthesis
sinu00071  Fatty acid degradation
sinu00190  Oxidative phosphorylation
sinu00220  Arginine biosynthesis
sinu00250  Alanine, aspartate and glutamate metabolism
sinu00280  Valine, leucine and isoleucine degradation
sinu00350  Tyrosine metabolism
sinu00470  D-Amino acid metabolism
sinu00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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