KEGG   PATHWAY: sir00020
Entry
sir00020                    Pathway                                
Name
Citrate cycle (TCA cycle) - Sulfolobus islandicus REY15A
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
sir00020  Citrate cycle (TCA cycle)
sir00020

Module
sir_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:sir00020]
sir_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:sir00020]
sir_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:sir00020]
sir_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:sir00020]
sir_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:sir00020]
Other DBs
GO: 0006099
Organism
Sulfolobus islandicus REY15A [GN:sir]
Gene
SiRe_2618  2-methylcitrate synthase/citrate synthase II [KO:K01647] [EC:2.3.3.1]
SiRe_1005  aconitate hydratase 1 [KO:K01681] [EC:4.2.1.3]
SiRe_2695  isocitrate dehydrogenase, NADP-dependent [KO:K00031] [EC:1.1.1.42]
SiRe_0979  FAD-dependent pyridine nucleotide-disulfide oxidoreductase [KO:K00382] [EC:1.8.1.4]
SiRe_2640  FAD-dependent pyridine nucleotide-disulphideoxido reductase [KO:K00382] [EC:1.8.1.4]
SiRe_2456  pyruvate flavodoxin/ferredoxin oxidoreductase domain protein [KO:K00174] [EC:1.2.7.3 1.2.7.11]
SiRe_2457  pyruvate ferredoxin/flavodoxin oxidoreductase, beta subunit [KO:K00175] [EC:1.2.7.3 1.2.7.11]
SiRe_0276  ATP-citrate lyase/succinyl-CoA ligase [KO:K01902] [EC:6.2.1.5]
SiRe_0277  Succinate--CoA ligase (ADP-forming) [KO:K01903] [EC:6.2.1.5]
SiRe_0155  succinate dehydrogenase or fumarate reductase,flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
SiRe_0156  succinate dehydrogenase and fumarate reductase iron-sulfur protein [KO:K00240] [EC:1.3.5.1]
SiRe_0157  CoB--CoM heterodisulfide reductase [KO:K00241]
SiRe_0158  succinate dehydrogenase subunit D (SdhD) [KO:K18859]
SiRe_1020  fumarate lyase [KO:K01679] [EC:4.2.1.2]
SiRe_2622  Lactate/malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
SiRe_0398  Phosphoenolpyruvate carboxykinase (GTP) [KO:K01596] [EC:4.1.1.32]
SiRe_2380  pyruvate flavodoxin/ferredoxin oxidoreductase domain protein [KO:K00169] [EC:1.2.7.1]
SiRe_0339  pyruvate flavodoxin/ferredoxin oxidoreductase, alpha subunit [KO:K00169] [EC:1.2.7.1]
SiRe_2379  thiamine pyrophosphate protein domain protein TPP-binding protein [KO:K00170] [EC:1.2.7.1]
SiRe_0338  thiamine pyrophosphate protein domain protein TPP-binding protein [KO:K00170] [EC:1.2.7.1]
SiRe_0363  thiamine pyrophosphate protein domain protein TPP-binding protein [KO:K00170] [EC:1.2.7.1]
SiRe_0366  pyruvate/ketoisovalerate oxidoreductase, gamma subunit [KO:K00172] [EC:1.2.7.1]
SiRe_2382  pyruvate/ketoisovalerate oxidoreductase, gamma subunit [KO:K00172] [EC:1.2.7.1]
SiRe_2381  pyruvate ferredoxin/flavodoxin oxidoreductase, delta subunit [KO:K00171] [EC:1.2.7.1]
SiRe_0340  pyruvate ferredoxin, flavodoxin oxidoreductase, delta subunit [KO:K00171] [EC:1.2.7.1]
SiRe_0365  pyruvate ferredoxin/flavodoxin oxidoreductase, delta subunit [KO:K00171] [EC:1.2.7.1]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
sir00010  Glycolysis / Gluconeogenesis
sir00053  Ascorbate and aldarate metabolism
sir00061  Fatty acid biosynthesis
sir00071  Fatty acid degradation
sir00190  Oxidative phosphorylation
sir00220  Arginine biosynthesis
sir00250  Alanine, aspartate and glutamate metabolism
sir00280  Valine, leucine and isoleucine degradation
sir00350  Tyrosine metabolism
sir00470  D-Amino acid metabolism
sir00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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