KEGG   PATHWAY: sis00020
Entry
sis00020                    Pathway                                
Name
Citrate cycle (TCA cycle) - Sulfolobus islandicus L.S.2.15
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
sis00020  Citrate cycle (TCA cycle)
sis00020

Module
sis_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:sis00020]
sis_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:sis00020]
sis_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:sis00020]
sis_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:sis00020]
sis_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:sis00020]
Other DBs
GO: 0006099
Organism
Sulfolobus islandicus L.S.2.15 [GN:sis]
Gene
LS215_2888  2-methylcitrate synthase/citrate synthase II [KO:K01647] [EC:2.3.3.1]
LS215_1228  aconitate hydratase 1 [KO:K01681] [EC:4.2.1.3]
LS215_2965  isocitrate dehydrogenase, NADP-dependent [KO:K00031] [EC:1.1.1.42]
LS215_1202  FAD-dependent pyridine nucleotide-disulphide oxidoreductase [KO:K00382] [EC:1.8.1.4]
LS215_0778  FAD-dependent pyridine nucleotide-disulphide oxidoreductase [KO:K00382] [EC:1.8.1.4]
LS215_2910  FAD-dependent pyridine nucleotide-disulphide oxidoreductase [KO:K00382] [EC:1.8.1.4]
LS215_2658  pyruvate flavodoxin/ferredoxin oxidoreductase domain protein [KO:K00174] [EC:1.2.7.3 1.2.7.11]
LS215_2657  pyruvate ferredoxin/flavodoxin oxidoreductase, beta subunit [KO:K00175] [EC:1.2.7.3 1.2.7.11]
LS215_0303  ATP-citrate lyase/succinyl-CoA ligase [KO:K01902] [EC:6.2.1.5]
LS215_0304  Succinate--CoA ligase (ADP-forming) [KO:K01903] [EC:6.2.1.5]
LS215_0186  succinate dehydrogenase or fumarate reductase, flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
LS215_0187  succinate dehydrogenase and fumarate reductase iron-sulfur protein [KO:K00240] [EC:1.3.5.1]
LS215_0188  CoB--CoM heterodisulfide reductase [KO:K00241]
LS215_0189  succinate dehydrogenase subunit D (SdhD) [KO:K18859]
LS215_1243  fumarate lyase [KO:K01679] [EC:4.2.1.2]
LS215_2892  Lactate/malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
LS215_0433  Phosphoenolpyruvate carboxykinase (GTP) [KO:K01596] [EC:4.1.1.32]
LS215_0774  catalytic domain of components of various dehydrogenase complexes [KO:K00627] [EC:2.3.1.12]
LS215_0369  pyruvate flavodoxin/ferredoxin oxidoreductase domain protein [KO:K00169] [EC:1.2.7.1]
LS215_2727  pyruvate flavodoxin/ferredoxin oxidoreductase domain protein [KO:K00169] [EC:1.2.7.1]
LS215_2728  thiamine pyrophosphate protein domain protein TPP-binding [KO:K00170] [EC:1.2.7.1]
LS215_0395  thiamine pyrophosphate protein domain protein TPP-binding [KO:K00170] [EC:1.2.7.1]
LS215_0368  thiamine pyrophosphate protein domain protein TPP-binding [KO:K00170] [EC:1.2.7.1]
LS215_0398  pyruvate/ketoisovalerate oxidoreductase, gamma subunit [KO:K00172] [EC:1.2.7.1]
LS215_2725  pyruvate/ketoisovalerate oxidoreductase, gamma subunit [KO:K00172] [EC:1.2.7.1]
LS215_2726  pyruvate ferredoxin/flavodoxin oxidoreductase, delta subunit [KO:K00171] [EC:1.2.7.1]
LS215_0370  pyruvate ferredoxin/flavodoxin oxidoreductase, delta subunit [KO:K00171] [EC:1.2.7.1]
LS215_0397  pyruvate ferredoxin/flavodoxin oxidoreductase, delta subunit [KO:K00171] [EC:1.2.7.1]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
sis00010  Glycolysis / Gluconeogenesis
sis00053  Ascorbate and aldarate metabolism
sis00061  Fatty acid biosynthesis
sis00071  Fatty acid degradation
sis00190  Oxidative phosphorylation
sis00220  Arginine biosynthesis
sis00250  Alanine, aspartate and glutamate metabolism
sis00280  Valine, leucine and isoleucine degradation
sis00350  Tyrosine metabolism
sis00470  D-Amino acid metabolism
sis00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

DBGET integrated database retrieval system