KEGG   PATHWAY: sita00630
Entry
sita00630                   Pathway                                
Name
Glyoxylate and dicarboxylate metabolism - Setaria italica (foxtail millet)
Class
Metabolism; Carbohydrate metabolism
Pathway map
sita00630  Glyoxylate and dicarboxylate metabolism
sita00630

Module
sita_M00012  Glyoxylate cycle [PATH:sita00630]
sita_M00532  Photorespiration [PATH:sita00630]
sita_M00621  Glycine cleavage system [PATH:sita00630]
Other DBs
GO: 0046487 0043648
Organism
Setaria italica (foxtail millet) [GN:sita]
Gene
101774000  isocitrate lyase [KO:K01637] [EC:4.1.3.1 4.1.3.30]
101767488  acetyl-coenzyme A synthetase, chloroplastic/glyoxysomal [KO:K01895] [EC:6.2.1.1]
101776963  acetyl-coenzyme A synthetase, chloroplastic/glyoxysomal [KO:K01895] [EC:6.2.1.1]
101758784  acetate/butyrate--CoA ligase AAE7, peroxisomal [KO:K01913] [EC:6.2.1.1 6.2.1.2]
101758375  LOW QUALITY PROTEIN: acetate/butyrate--CoA ligase AAE7, peroxisomal-like [KO:K01913] [EC:6.2.1.1 6.2.1.2]
101786533  malate synthase, glyoxysomal [KO:K01638] [EC:2.3.3.9]
101760275  malate dehydrogenase, cytoplasmic [KO:K00025] [EC:1.1.1.37]
101765343  malate dehydrogenase, cytoplasmic [KO:K00025] [EC:1.1.1.37]
101779301  malate dehydrogenase, mitochondrial [KO:K00026] [EC:1.1.1.37]
101760979  malate dehydrogenase, mitochondrial [KO:K00026] [EC:1.1.1.37]
101772404  malate dehydrogenase, glyoxysomal [KO:K00026] [EC:1.1.1.37]
101771167  malate dehydrogenase, chloroplastic [KO:K00026] [EC:1.1.1.37]
101761852  malate dehydrogenase, chloroplastic [KO:K00026] [EC:1.1.1.37]
101771269  malate dehydrogenase, chloroplastic isoform X2 [KO:K00026] [EC:1.1.1.37]
101775144  malate dehydrogenase, glyoxysomal [KO:K00026] [EC:1.1.1.37]
101786364  citrate synthase 4, mitochondrial isoform X1 [KO:K01647] [EC:2.3.3.1]
101771119  citrate synthase 3, peroxisomal [KO:K01647] [EC:2.3.3.1]
101753164  putative aconitate hydratase, cytoplasmic [KO:K01681] [EC:4.2.1.3]
101758928  putative aconitate hydratase, cytoplasmic [KO:K01681] [EC:4.2.1.3]
101771647  acetyl-CoA acetyltransferase, cytosolic 1 [KO:K00626] [EC:2.3.1.9]
101752713  acetyl-CoA acetyltransferase, cytosolic 1 isoform X1 [KO:K00626] [EC:2.3.1.9]
101762107  acetyl-CoA acetyltransferase, cytosolic 1 [KO:K00626] [EC:2.3.1.9]
101765752  peroxisomal (S)-2-hydroxy-acid oxidase GLO4 isoform X1 [KO:K11517] [EC:1.1.3.15]
101764932  peroxisomal (S)-2-hydroxy-acid oxidase GLO5 [KO:K11517] [EC:1.1.3.15]
101764130  peroxisomal (S)-2-hydroxy-acid oxidase GLO4 [KO:K11517] [EC:1.1.3.15]
101773478  peroxisomal (S)-2-hydroxy-acid oxidase GLO1 [KO:K11517] [EC:1.1.3.15]
101770781  peroxisomal (S)-2-hydroxy-acid oxidase GLO3 [KO:K11517] [EC:1.1.3.15]
101771416  peroxisomal (S)-2-hydroxy-acid oxidase GLO2 isoform X1 [KO:K11517] [EC:1.1.3.15]
101775718  catalase isozyme 3 [KO:K03781] [EC:1.11.1.6]
101780682  catalase isozyme 1 [KO:K03781] [EC:1.11.1.6]
101779870  catalase-1 [KO:K03781] [EC:1.11.1.6]
101780206  glyoxylate/hydroxypyruvate reductase HPR3 [KO:K15919] [EC:1.1.1.79 1.1.1.81]
101780600  glyoxylate/hydroxypyruvate reductase HPR3-like [KO:K15919] [EC:1.1.1.79 1.1.1.81]
101765621  glyoxylate/hydroxypyruvate reductase HPR3 [KO:K15919] [EC:1.1.1.79 1.1.1.81]
101772891  glyoxylate/hydroxypyruvate reductase HPR3 [KO:K15919] [EC:1.1.1.79 1.1.1.81]
101779408  glyoxylate/hydroxypyruvate reductase HPR3 [KO:K15919] [EC:1.1.1.79 1.1.1.81]
101778018  glyoxylate/succinic semialdehyde reductase 2, chloroplastic [KO:K18121] [EC:1.1.1.79 1.1.1.-]
101752734  glyoxylate/succinic semialdehyde reductase 1 [KO:K18121] [EC:1.1.1.79 1.1.1.-]
101756516  glycerate dehydrogenase [KO:K15893] [EC:1.1.1.29]
101760467  phosphoglycolate phosphatase 2 [KO:K19269] [EC:3.1.3.18 3.1.3.48]
101783973  phosphoglycolate phosphatase 1B, chloroplastic [KO:K19269] [EC:3.1.3.18 3.1.3.48]
19526795  rbcL; ribulose 1,5-bisphosphate carboxylase/oxygenase large subunit [KO:K01601] [EC:4.1.1.39]
101756247  LOW QUALITY PROTEIN: uncharacterized protein LOC101756247 [KO:K01601] [EC:4.1.1.39]
101763714  ribulose bisphosphate carboxylase small chain, chloroplastic [KO:K01602] [EC:4.1.1.39]
101768366  ribulose bisphosphate carboxylase small chain, chloroplastic [KO:K01602] [EC:4.1.1.39]
101768770  ribulose bisphosphate carboxylase small chain A, chloroplastic [KO:K01602] [EC:4.1.1.39]
101770259  ribulose bisphosphate carboxylase small chain, chloroplastic [KO:K01602] [EC:4.1.1.39]
101763225  ribulose bisphosphate carboxylase small chain, chloroplastic [KO:K01602] [EC:4.1.1.39]
101763632  ribulose bisphosphate carboxylase small chain, chloroplastic [KO:K01602] [EC:4.1.1.39]
101766283  serine--glyoxylate aminotransferase [KO:K00830] [EC:2.6.1.44 2.6.1.45 2.6.1.51]
101767913  glutamate--glyoxylate aminotransferase 1 [KO:K14272] [EC:2.6.1.4 2.6.1.2 2.6.1.44]
101766581  ferredoxin-dependent glutamate synthase, chloroplastic [KO:K00284] [EC:1.4.7.1]
101772334  glutamine synthetase cytosolic isozyme 1-1 [KO:K01915] [EC:6.3.1.2]
101764285  glutamine synthetase, chloroplastic [KO:K01915] [EC:6.3.1.2]
101757176  glutamine synthetase root isozyme 5 [KO:K01915] [EC:6.3.1.2]
101754854  glutamine synthetase cytosolic isozyme 1-3 [KO:K01915] [EC:6.3.1.2]
101774894  serine hydroxymethyltransferase 7 [KO:K00600] [EC:2.1.2.1]
101783340  serine hydroxymethyltransferase 4 [KO:K00600] [EC:2.1.2.1]
101759206  serine hydroxymethyltransferase 4 [KO:K00600] [EC:2.1.2.1]
101758360  serine hydroxymethyltransferase, mitochondrial [KO:K00600] [EC:2.1.2.1]
101760495  serine hydroxymethyltransferase 4 [KO:K00600] [EC:2.1.2.1]
101783792  LOW QUALITY PROTEIN: glycine dehydrogenase (decarboxylating), mitochondrial-like [KO:K00281] [EC:1.4.4.2]
101773028  aminomethyltransferase, mitochondrial [KO:K00605] [EC:2.1.2.10]
101760312  dihydrolipoyl dehydrogenase, mitochondrial isoform X2 [KO:K00382] [EC:1.8.1.4]
101769227  dihydrolipoyl dehydrogenase 1, chloroplastic [KO:K00382] [EC:1.8.1.4]
101756978  dihydrolipoyl dehydrogenase 1, chloroplastic [KO:K00382] [EC:1.8.1.4]
101763461  dihydrolipoyl dehydrogenase, mitochondrial [KO:K00382] [EC:1.8.1.4]
101756656  glycine cleavage system H protein 2, mitochondrial [KO:K02437]
101766600  glycine cleavage system H protein 2, mitochondrial [KO:K02437]
101763998  glycine cleavage system H protein, mitochondrial [KO:K02437]
101754874  D-glycerate 3-kinase, chloroplastic isoform X1 [KO:K15918] [EC:2.7.1.31]
101787006  LOW QUALITY PROTEIN: D-glycerate 3-kinase, chloroplastic [KO:K15918] [EC:2.7.1.31]
101779031  formate dehydrogenase 2, mitochondrial isoform X2 [KO:K00122] [EC:1.17.1.9]
101767583  formate dehydrogenase 1, mitochondrial [KO:K00122] [EC:1.17.1.9]
101779399  formyltetrahydrofolate deformylase 1, mitochondrial [KO:K01433] [EC:3.5.1.10]
101779206  formyltetrahydrofolate deformylase 1, mitochondrial [KO:K01433] [EC:3.5.1.10]
101752872  pentatricopeptide repeat-containing protein At2g29760, chloroplastic [KO:K01455] [EC:3.5.1.49]
101787007  LOW QUALITY PROTEIN: uncharacterized protein LOC101787007 [KO:K01455] [EC:3.5.1.49]
101782502  oxalate--CoA ligase [KO:K22133] [EC:6.2.1.8]
Compound
C00007  Oxygen
C00011  CO2
C00014  Ammonia
C00022  Pyruvate
C00024  Acetyl-CoA
C00025  L-Glutamate
C00026  2-Oxoglutarate
C00027  Hydrogen peroxide
C00033  Acetate
C00036  Oxaloacetate
C00037  Glycine
C00042  Succinate
C00048  Glyoxylate
C00058  Formate
C00064  L-Glutamine
C00065  L-Serine
C00091  Succinyl-CoA
C00100  Propanoyl-CoA
C00111  Glycerone phosphate
C00136  Butanoyl-CoA
C00149  (S)-Malate
C00158  Citrate
C00160  Glycolate
C00168  Hydroxypyruvate
C00197  3-Phospho-D-glycerate
C00209  Oxalate
C00258  D-Glycerate
C00266  Glycolaldehyde
C00311  Isocitrate
C00313  Oxalyl-CoA
C00332  Acetoacetyl-CoA
C00417  cis-Aconitate
C00552  meso-Tartaric acid
C00631  2-Phospho-D-glycerate
C00683  (S)-Methylmalonyl-CoA
C00798  Formyl-CoA
C00877  Crotonoyl-CoA
C00888  Pentanoyl-CoA
C00898  (R,R)-Tartaric acid
C00975  Dihydroxyfumarate
C00988  2-Phosphoglycolate
C01127  4-Hydroxy-2-oxoglutarate
C01146  2-Hydroxy-3-oxopropanoate
C01182  D-Ribulose 1,5-bisphosphate
C01213  (R)-Methylmalonyl-CoA
C01380  Ethylene glycol
C01732  Mesaconate
C01989  3-Ethylmalate
C01990  3-Oxalomalate
C02123  3-Propylmalate
C02405  Formyl phosphate
C03217  2-Hydroxy-3-oxoadipate
C03459  2-Hydroxy-3-oxosuccinate
C03548  trans-2,3-Epoxysuccinate
C03561  (R)-3-Hydroxybutanoyl-CoA
C03618  L-threo-3-Methylaspartate
C04348  L-Malyl-CoA
C06027  L-erythro-3-Methylmalyl-CoA
C06028  2-Methylfumaryl-CoA
C06049  N-Formylderivatives
C18026  (2S)-Ethylmalonyl-CoA
C18324  (2S)-Methylsuccinyl-CoA
C20238  (2R)-Ethylmalonyl-CoA
C22337  D-Ribulose 1-phosphate
Reference
PMID:10978349
  Authors
Njau RK, Herndon CA, Hawes JW.
  Title
Novel beta-hydroxyacid dehydrogenases in Escherichia coli and Haemophilus influenzae.
  Journal
J Biol Chem 275:38780-6 (2000)
DOI:10.1074/jbc.M007432200
Reference
PMID:18065535
  Authors
Zarzycki J, Schlichting A, Strychalsky N, Muller M, Alber BE, Fuchs G
  Title
Mesaconyl-coenzyme A hydratase, a new enzyme of two central carbon metabolic pathways in bacteria.
  Journal
J Bacteriol 190:1366-74 (2008)
DOI:10.1128/JB.01621-07
Reference
PMID:18819910
  Authors
Erb TJ, Retey J, Fuchs G, Alber BE
  Title
Ethylmalonyl-CoA mutase from Rhodobacter sphaeroides defines a new subclade of coenzyme B12-dependent acyl-CoA mutases.
  Journal
J Biol Chem 283:32283-93 (2008)
DOI:10.1074/jbc.M805527200
Reference
PMID:9596633
  Authors
Coschigano KT, Melo-Oliveira R, Lim J, Coruzzi GM
  Title
Arabidopsis gls mutants and distinct Fd-GOGAT genes. Implications for photorespiration and primary nitrogen assimilation.
  Journal
Plant Cell 10:741-52 (1998)
DOI:10.1105/tpc.10.5.741
Reference
PMID:16407450
  Authors
Masclaux-Daubresse C, Reisdorf-Cren M, Pageau K, Lelandais M, Grandjean O, Kronenberger J, Valadier MH, Feraud M, Jouglet T, Suzuki A
  Title
Glutamine synthetase-glutamate synthase pathway and glutamate dehydrogenase play distinct roles in the sink-source nitrogen cycle in tobacco.
  Journal
Plant Physiol 140:444-56 (2006)
DOI:10.1104/pp.105.071910
Reference
PMID:21252347
  Authors
Khomyakova M, Bukmez O, Thomas LK, Erb TJ, Berg IA
  Title
A methylaspartate cycle in haloarchaea.
  Journal
Science 331:334-7 (2011)
DOI:10.1126/science.1196544
Reference
PMID:11513957
  Authors
Serrano JA, Bonete MJ
  Title
Sequencing, phylogenetic and transcriptional analysis of the glyoxylate bypass operon (ace) in the halophilic archaeon Haloferax volcanii.
  Journal
Biochim Biophys Acta 1520:154-62 (2001)
DOI:10.1016/S0167-4781(01)00263-9
Related
pathway
sita00010  Glycolysis / Gluconeogenesis
sita00020  Citrate cycle (TCA cycle)
sita00030  Pentose phosphate pathway
sita00053  Ascorbate and aldarate metabolism
sita00071  Fatty acid degradation
sita00230  Purine metabolism
sita00250  Alanine, aspartate and glutamate metabolism
sita00260  Glycine, serine and threonine metabolism
sita00620  Pyruvate metabolism
sita00710  Carbon fixation by Calvin cycle
sita00750  Vitamin B6 metabolism
sita00910  Nitrogen metabolism
KO pathway
ko00630   
LinkDB

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