KEGG   PATHWAY: siy00020
Entry
siy00020                    Pathway                                
Name
Citrate cycle (TCA cycle) - Sulfolobus islandicus Y.G.57.14
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
siy00020  Citrate cycle (TCA cycle)
siy00020

Module
siy_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:siy00020]
siy_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:siy00020]
siy_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:siy00020]
siy_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:siy00020]
siy_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:siy00020]
Other DBs
GO: 0006099
Organism
Sulfolobus islandicus Y.G.57.14 [GN:siy]
Gene
YG5714_2901  2-methylcitrate synthase/citrate synthase II [KO:K01647] [EC:2.3.3.1]
YG5714_1127  aconitate hydratase 1 [KO:K01681] [EC:4.2.1.3]
YG5714_2980  isocitrate dehydrogenase, NADP-dependent [KO:K00031] [EC:1.1.1.42]
YG5714_0803  FAD-dependent pyridine nucleotide-disulphide oxidoreductase [KO:K00382] [EC:1.8.1.4]
YG5714_1101  FAD-dependent pyridine nucleotide-disulphide oxidoreductase [KO:K00382] [EC:1.8.1.4]
YG5714_2924  FAD-dependent pyridine nucleotide-disulphide oxidoreductase [KO:K00382] [EC:1.8.1.4]
YG5714_2645  pyruvate flavodoxin/ferredoxin oxidoreductase domain protein [KO:K00174] [EC:1.2.7.3 1.2.7.11]
YG5714_2644  pyruvate ferredoxin/flavodoxin oxidoreductase, beta subunit [KO:K00175] [EC:1.2.7.3 1.2.7.11]
YG5714_0277  ATP-citrate lyase/succinyl-CoA ligase [KO:K01902] [EC:6.2.1.5]
YG5714_0278  Succinate--CoA ligase (ADP-forming) [KO:K01903] [EC:6.2.1.5]
YG5714_0159  succinate dehydrogenase or fumarate reductase, flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
YG5714_0160  succinate dehydrogenase and fumarate reductase iron-sulfur protein [KO:K00240] [EC:1.3.5.1]
YG5714_0161  CoB--CoM heterodisulfide reductase [KO:K00241]
YG5714_0162  succinate dehydrogenase subunit D (SdhD) [KO:K18859]
YG5714_1142  fumarate lyase [KO:K01679] [EC:4.2.1.2]
YG5714_2905  Lactate/malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
YG5714_0393  Phosphoenolpyruvate carboxykinase (GTP) [KO:K01596] [EC:4.1.1.32]
YG5714_0799  catalytic domain of components of various dehydrogenase complexes [KO:K00627] [EC:2.3.1.12]
YG5714_0361  pyruvate flavodoxin/ferredoxin oxidoreductase domain protein [KO:K00169] [EC:1.2.7.1]
YG5714_2730  pyruvate flavodoxin/ferredoxin oxidoreductase domain protein [KO:K00169] [EC:1.2.7.1]
YG5714_0362  thiamine pyrophosphate protein domain protein TPP-binding [KO:K00170] [EC:1.2.7.1]
YG5714_0373  thiamine pyrophosphate protein domain protein TPP-binding [KO:K00170] [EC:1.2.7.1]
YG5714_2731  thiamine pyrophosphate protein domain protein TPP-binding [KO:K00170] [EC:1.2.7.1]
YG5714_0376  pyruvate/ketoisovalerate oxidoreductase, gamma subunit [KO:K00172] [EC:1.2.7.1]
YG5714_2728  pyruvate/ketoisovalerate oxidoreductase, gamma subunit [KO:K00172] [EC:1.2.7.1]
YG5714_2729  pyruvate ferredoxin/flavodoxin oxidoreductase, delta subunit [KO:K00171] [EC:1.2.7.1]
YG5714_0360  pyruvate ferredoxin/flavodoxin oxidoreductase, delta subunit [KO:K00171] [EC:1.2.7.1]
YG5714_0375  pyruvate ferredoxin/flavodoxin oxidoreductase, delta subunit [KO:K00171] [EC:1.2.7.1]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
siy00010  Glycolysis / Gluconeogenesis
siy00053  Ascorbate and aldarate metabolism
siy00061  Fatty acid biosynthesis
siy00071  Fatty acid degradation
siy00190  Oxidative phosphorylation
siy00220  Arginine biosynthesis
siy00250  Alanine, aspartate and glutamate metabolism
siy00280  Valine, leucine and isoleucine degradation
siy00350  Tyrosine metabolism
siy00470  D-Amino acid metabolism
siy00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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