KEGG   PATHWAY: skh00630
Entry
skh00630                    Pathway                                
Name
Glyoxylate and dicarboxylate metabolism - Shewanella khirikhana
Class
Metabolism; Carbohydrate metabolism
Pathway map
skh00630  Glyoxylate and dicarboxylate metabolism
skh00630

Module
skh_M00012  Glyoxylate cycle [PATH:skh00630]
skh_M00621  Glycine cleavage system [PATH:skh00630]
Other DBs
GO: 0046487 0043648
Organism
Shewanella khirikhana [GN:skh]
Gene
STH12_02158  aceA; Isocitrate lyase [KO:K01637] [EC:4.1.3.1]
STH12_01805  acs; Acetyl-coenzyme A synthetase [KO:K01895] [EC:6.2.1.1]
STH12_02159  aceB; Malate synthase A [KO:K01638] [EC:2.3.3.9]
STH12_00203  mdh_1; Malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
STH12_01053  gltA_1; Citrate synthase [KO:K01647] [EC:2.3.3.1]
STH12_04080  acnB; Aconitate hydratase 2 [KO:K01682] [EC:4.2.1.3 4.2.1.99]
STH12_00947  thlA; Acetyl-CoA acetyltransferase [KO:K00626] [EC:2.3.1.9]
STH12_02828  cat; Catalase [KO:K03781] [EC:1.11.1.6]
STH12_02688  hprA; Glycerate dehydrogenase [KO:K00018] [EC:1.1.1.29]
STH12_03294  gph_3; Phosphoglycolate phosphatase [KO:K01091] [EC:3.1.3.18]
STH12_01677  ppaX; Pyrophosphatase PpaX [KO:K01091] [EC:3.1.3.18]
STH12_03204  pucG; Purine catabolism protein PucG [KO:K00830] [EC:2.6.1.44 2.6.1.45 2.6.1.51]
STH12_03352  glnA; Glutamine synthetase [KO:K01915] [EC:6.3.1.2]
STH12_00733  puuA_1; Gamma-glutamylputrescine synthetase PuuA [KO:K01915] [EC:6.3.1.2]
STH12_02535  puuA_2; Gamma-glutamylputrescine synthetase PuuA [KO:K01915] [EC:6.3.1.2]
STH12_00555  glyA; Serine hydroxymethyltransferase [KO:K00600] [EC:2.1.2.1]
STH12_02596  gcvP; Glycine dehydrogenase (decarboxylating) [KO:K00281] [EC:1.4.4.2]
STH12_02598  gcvT; Aminomethyltransferase [KO:K00605] [EC:2.1.2.10]
STH12_04075  lpdA; Dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
STH12_02597  gcvH; Glycine cleavage system H protein [KO:K02437]
STH12_01664  garR; 2-hydroxy-3-oxopropionate reductase [KO:K00042] [EC:1.1.1.60]
STH12_03150  garK; Glycerate 2-kinase [KO:K00865] [EC:2.7.1.165]
STH12_01491  eda; KHG/KDPG aldolase [KO:K01625] [EC:4.1.2.14 4.1.3.42]
STH12_03596  fdhA_1; Formate dehydrogenase subunit alpha precursor [KO:K00123] [EC:1.17.1.9]
STH12_03600  fdhA_2; Formate dehydrogenase subunit alpha precursor [KO:K00123] [EC:1.17.1.9]
STH12_03595  fdhB1_1; Formate dehydrogenase iron-sulfur subunit [KO:K00124]
STH12_03599  fdhB1_2; Formate dehydrogenase iron-sulfur subunit [KO:K00124]
STH12_03594  fdnI_1; Formate dehydrogenase, nitrate-inducible, cytochrome b556(Fdn) subunit [KO:K00127]
STH12_03598  fdnI_2; Formate dehydrogenase, nitrate-inducible, cytochrome b556(Fdn) subunit [KO:K00127]
STH12_00689  purU; Formyltetrahydrofolate deformylase [KO:K01433] [EC:3.5.1.10]
Compound
C00007  Oxygen
C00011  CO2
C00014  Ammonia
C00022  Pyruvate
C00024  Acetyl-CoA
C00025  L-Glutamate
C00026  2-Oxoglutarate
C00027  Hydrogen peroxide
C00033  Acetate
C00036  Oxaloacetate
C00037  Glycine
C00042  Succinate
C00048  Glyoxylate
C00058  Formate
C00064  L-Glutamine
C00065  L-Serine
C00091  Succinyl-CoA
C00100  Propanoyl-CoA
C00111  Glycerone phosphate
C00136  Butanoyl-CoA
C00149  (S)-Malate
C00158  Citrate
C00160  Glycolate
C00168  Hydroxypyruvate
C00197  3-Phospho-D-glycerate
C00209  Oxalate
C00258  D-Glycerate
C00266  Glycolaldehyde
C00311  Isocitrate
C00313  Oxalyl-CoA
C00332  Acetoacetyl-CoA
C00417  cis-Aconitate
C00552  meso-Tartaric acid
C00631  2-Phospho-D-glycerate
C00683  (S)-Methylmalonyl-CoA
C00798  Formyl-CoA
C00877  Crotonoyl-CoA
C00888  Pentanoyl-CoA
C00898  (R,R)-Tartaric acid
C00975  Dihydroxyfumarate
C00988  2-Phosphoglycolate
C01127  4-Hydroxy-2-oxoglutarate
C01146  2-Hydroxy-3-oxopropanoate
C01182  D-Ribulose 1,5-bisphosphate
C01213  (R)-Methylmalonyl-CoA
C01380  Ethylene glycol
C01732  Mesaconate
C01989  3-Ethylmalate
C01990  3-Oxalomalate
C02123  3-Propylmalate
C02405  Formyl phosphate
C03217  2-Hydroxy-3-oxoadipate
C03459  2-Hydroxy-3-oxosuccinate
C03548  trans-2,3-Epoxysuccinate
C03561  (R)-3-Hydroxybutanoyl-CoA
C03618  L-threo-3-Methylaspartate
C04348  L-Malyl-CoA
C06027  L-erythro-3-Methylmalyl-CoA
C06028  2-Methylfumaryl-CoA
C06049  N-Formylderivatives
C18026  (2S)-Ethylmalonyl-CoA
C18324  (2S)-Methylsuccinyl-CoA
C20238  (2R)-Ethylmalonyl-CoA
C22337  D-Ribulose 1-phosphate
Reference
PMID:10978349
  Authors
Njau RK, Herndon CA, Hawes JW.
  Title
Novel beta-hydroxyacid dehydrogenases in Escherichia coli and Haemophilus influenzae.
  Journal
J Biol Chem 275:38780-6 (2000)
DOI:10.1074/jbc.M007432200
Reference
PMID:18065535
  Authors
Zarzycki J, Schlichting A, Strychalsky N, Muller M, Alber BE, Fuchs G
  Title
Mesaconyl-coenzyme A hydratase, a new enzyme of two central carbon metabolic pathways in bacteria.
  Journal
J Bacteriol 190:1366-74 (2008)
DOI:10.1128/JB.01621-07
Reference
PMID:18819910
  Authors
Erb TJ, Retey J, Fuchs G, Alber BE
  Title
Ethylmalonyl-CoA mutase from Rhodobacter sphaeroides defines a new subclade of coenzyme B12-dependent acyl-CoA mutases.
  Journal
J Biol Chem 283:32283-93 (2008)
DOI:10.1074/jbc.M805527200
Reference
PMID:9596633
  Authors
Coschigano KT, Melo-Oliveira R, Lim J, Coruzzi GM
  Title
Arabidopsis gls mutants and distinct Fd-GOGAT genes. Implications for photorespiration and primary nitrogen assimilation.
  Journal
Plant Cell 10:741-52 (1998)
DOI:10.1105/tpc.10.5.741
Reference
PMID:16407450
  Authors
Masclaux-Daubresse C, Reisdorf-Cren M, Pageau K, Lelandais M, Grandjean O, Kronenberger J, Valadier MH, Feraud M, Jouglet T, Suzuki A
  Title
Glutamine synthetase-glutamate synthase pathway and glutamate dehydrogenase play distinct roles in the sink-source nitrogen cycle in tobacco.
  Journal
Plant Physiol 140:444-56 (2006)
DOI:10.1104/pp.105.071910
Reference
PMID:21252347
  Authors
Khomyakova M, Bukmez O, Thomas LK, Erb TJ, Berg IA
  Title
A methylaspartate cycle in haloarchaea.
  Journal
Science 331:334-7 (2011)
DOI:10.1126/science.1196544
Reference
PMID:11513957
  Authors
Serrano JA, Bonete MJ
  Title
Sequencing, phylogenetic and transcriptional analysis of the glyoxylate bypass operon (ace) in the halophilic archaeon Haloferax volcanii.
  Journal
Biochim Biophys Acta 1520:154-62 (2001)
DOI:10.1016/S0167-4781(01)00263-9
Related
pathway
skh00010  Glycolysis / Gluconeogenesis
skh00020  Citrate cycle (TCA cycle)
skh00030  Pentose phosphate pathway
skh00053  Ascorbate and aldarate metabolism
skh00071  Fatty acid degradation
skh00230  Purine metabolism
skh00250  Alanine, aspartate and glutamate metabolism
skh00260  Glycine, serine and threonine metabolism
skh00620  Pyruvate metabolism
skh00710  Carbon fixation by Calvin cycle
skh00750  Vitamin B6 metabolism
skh00910  Nitrogen metabolism
KO pathway
ko00630   
LinkDB

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