KEGG   PATHWAY: sku00020
Entry
sku00020                    Pathway                                
Name
Citrate cycle (TCA cycle) - Sulfuricurvum kujiense
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
sku00020  Citrate cycle (TCA cycle)
sku00020

Module
sku_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:sku00020]
sku_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:sku00020]
sku_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:sku00020]
sku_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:sku00020]
sku_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:sku00020]
Other DBs
GO: 0006099
Organism
Sulfuricurvum kujiense [GN:sku]
Gene
Sulku_1443  citrate synthase [KO:K01647] [EC:2.3.3.1]
Sulku_0667  ATP-citrate lyase/succinyl-CoA ligase [KO:K15230] [EC:2.3.3.8]
Sulku_0666  ATP citrate lyase subunit 1 [KO:K15231] [EC:2.3.3.8]
Sulku_1185  aconitase [KO:K01682] [EC:4.2.1.3 4.2.1.99]
Sulku_1464  isocitrate dehydrogenase, NADP-dependent [KO:K00031] [EC:1.1.1.42]
Sulku_1044  pyruvate flavodoxin/ferredoxin oxidoreductase domain protein [KO:K00174] [EC:1.2.7.3 1.2.7.11]
Sulku_1457  2-oxoglutarate ferredoxin oxidoreductase, alpha subunit [KO:K00174] [EC:1.2.7.3 1.2.7.11]
Sulku_1045  pyruvate ferredoxin/flavodoxin oxidoreductase, beta subunit [KO:K00175] [EC:1.2.7.3 1.2.7.11]
Sulku_1456  2-oxoglutarate ferredoxin oxidoreductase, beta subunit [KO:K00175] [EC:1.2.7.3 1.2.7.11]
Sulku_1455  2-oxoglutarate ferredoxin oxidoreductase, gamma subunit [KO:K00177] [EC:1.2.7.3]
Sulku_1458  2-oxoglutarate ferredoxin oxidoreductase, delta subunit [KO:K00176] [EC:1.2.7.3]
Sulku_1460  succinyl-CoA synthetase (ADP-forming) alpha subunit [KO:K01902] [EC:6.2.1.5]
Sulku_1461  succinyl-CoA synthetase (ADP-forming) beta subunit [KO:K01903] [EC:6.2.1.5]
Sulku_1574  succinate dehydrogenase subunit A [KO:K00239] [EC:1.3.5.1]
Sulku_0072  succinate dehydrogenase subunit A [KO:K00239] [EC:1.3.5.1]
Sulku_1575  succinate dehydrogenase subunit B [KO:K00240] [EC:1.3.5.1]
Sulku_1576  succinate dehydrogenase subunit C [KO:K00241]
Sulku_1462  fumarase [KO:K01679] [EC:4.2.1.2]
Sulku_1463  malate dehydrogenase (NAD) [KO:K00024] [EC:1.1.1.37]
Sulku_1444  Malate dehydrogenase (acceptor) [KO:K00116] [EC:1.1.5.4]
Sulku_0513  Carbamoyl-phosphate synthase L chain ATP-binding protein [KO:K01959] [EC:6.4.1.1]
Sulku_1608  biotin/lipoyl attachment domain-containing protein [KO:K01960] [EC:6.4.1.1]
Sulku_2190  phosphoenolpyruvate carboxykinase (ATP) [KO:K01610] [EC:4.1.1.49]
Sulku_2330  pyruvate flavodoxin/ferredoxin oxidoreductase domain protein [KO:K00169] [EC:1.2.7.1]
Sulku_2329  thiamine pyrophosphate TPP-binding domain-containing protein [KO:K00170] [EC:1.2.7.1]
Sulku_2331  pyruvate ferredoxin/flavodoxin oxidoreductase, delta subunit [KO:K00171] [EC:1.2.7.1]
Sulku_1860  pyruvate ferredoxin/flavodoxin oxidoreductase [KO:K03737] [EC:1.2.7.1 1.2.7.-]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
sku00010  Glycolysis / Gluconeogenesis
sku00053  Ascorbate and aldarate metabolism
sku00061  Fatty acid biosynthesis
sku00071  Fatty acid degradation
sku00190  Oxidative phosphorylation
sku00220  Arginine biosynthesis
sku00250  Alanine, aspartate and glutamate metabolism
sku00280  Valine, leucine and isoleucine degradation
sku00350  Tyrosine metabolism
sku00470  D-Amino acid metabolism
sku00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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