KEGG   PATHWAY: smab00020
Entry
smab00020                   Pathway                                
Name
Citrate cycle (TCA cycle) - Sulfurovum mangrovi
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
smab00020  Citrate cycle (TCA cycle)
smab00020

Module
smab_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:smab00020]
smab_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:smab00020]
smab_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:smab00020]
smab_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:smab00020]
smab_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:smab00020]
Other DBs
GO: 0006099
Organism
Sulfurovum mangrovi [GN:smab]
Gene
LN246_12960  citrate synthase [KO:K01647] [EC:2.3.3.1]
LN246_02625  ATP citrate synthase [KO:K15230] [EC:2.3.3.8]
LN246_13195  ATP citrate synthase [KO:K15230] [EC:2.3.3.8]
LN246_02620  ATPase [KO:K15231] [EC:2.3.3.8]
LN246_13190  ATPase [KO:K15231] [EC:2.3.3.8]
LN246_08070  bifunctional aconitate hydratase 2/2-methylisocitrate dehydratase [KO:K01682] [EC:4.2.1.3 4.2.1.99]
LN246_02855  NADP-dependent isocitrate dehydrogenase [KO:K00031] [EC:1.1.1.42]
LN246_13495  NADP-dependent isocitrate dehydrogenase [KO:K00031] [EC:1.1.1.42]
LN246_02905  2-oxoglutarate synthase subunit alpha [KO:K00174] [EC:1.2.7.3 1.2.7.11]
LN246_09110  2-oxoacid:acceptor oxidoreductase subunit alpha [KO:K00174] [EC:1.2.7.3 1.2.7.11]
LN246_13545  2-oxoglutarate synthase subunit alpha [KO:K00174] [EC:1.2.7.3 1.2.7.11]
LN246_02910  2-oxoglutarate ferredoxin oxidoreductase subunit beta [KO:K00175] [EC:1.2.7.3 1.2.7.11]
LN246_09115  thiamine pyrophosphate-dependent enzyme [KO:K00175] [EC:1.2.7.3 1.2.7.11]
LN246_02915  2-oxoacid:acceptor oxidoreductase family protein [KO:K00177] [EC:1.2.7.3]
LN246_13555  2-oxoacid:acceptor oxidoreductase family protein [KO:K00177] [EC:1.2.7.3]
LN246_02900  4Fe-4S binding protein [KO:K00176] [EC:1.2.7.3]
LN246_13540  4Fe-4S binding protein [KO:K00176] [EC:1.2.7.3]
LN246_02890  sucD; succinate--CoA ligase subunit alpha [KO:K01902] [EC:6.2.1.5]
LN246_13530  sucD; succinate--CoA ligase subunit alpha [KO:K01902] [EC:6.2.1.5]
LN246_02885  sucC; ADP-forming succinate--CoA ligase subunit beta [KO:K01903] [EC:6.2.1.5]
LN246_13525  sucC; ADP-forming succinate--CoA ligase subunit beta [KO:K01903] [EC:6.2.1.5]
LN246_06150  FAD-binding protein [KO:K00239] [EC:1.3.5.1]
LN246_06145  sdhB; succinate dehydrogenase iron-sulfur subunit [KO:K00240] [EC:1.3.5.1]
LN246_06140  CoB--CoM heterodisulfide reductase iron-sulfur subunit B family protein [KO:K00241]
LN246_02870  fumarate hydratase [KO:K01677] [EC:4.2.1.2]
LN246_13510  fumarate hydratase [KO:K01677] [EC:4.2.1.2]
LN246_02875  Fe-S-containing hydro-lyase [KO:K01678] [EC:4.2.1.2]
LN246_02880  fumC; class II fumarate hydratase [KO:K01679] [EC:4.2.1.2]
LN246_13520  fumC; class II fumarate hydratase [KO:K01679] [EC:4.2.1.2]
LN246_02860  malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
LN246_02865  malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
LN246_13505  malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
LN246_04515  FAD-dependent oxidoreductase [KO:K00116] [EC:1.1.5.4]
LN246_01495  acetyl-CoA carboxylase biotin carboxylase subunit [KO:K01959] [EC:6.4.1.1]
LN246_14040  acetyl-CoA carboxylase biotin carboxylase subunit [KO:K01959] [EC:6.4.1.1]
LN246_07485  biotin attachment protein [KO:K01960] [EC:6.4.1.1]
LN246_07475  pckA; phosphoenolpyruvate carboxykinase (ATP) [KO:K01610] [EC:4.1.1.49]
LN246_01180  2-oxoacid:ferredoxin oxidoreductase subunit alpha [KO:K00169] [EC:1.2.7.1]
LN246_13705  2-oxoacid:ferredoxin oxidoreductase subunit alpha [KO:K00169] [EC:1.2.7.1]
LN246_01185  thiamine pyrophosphate-dependent enzyme [KO:K00170] [EC:1.2.7.1]
LN246_01170  pyruvate flavodoxin oxidoreductase subunit gamma [KO:K00172] [EC:1.2.7.1]
LN246_13695  pyruvate flavodoxin oxidoreductase subunit gamma [KO:K00172] [EC:1.2.7.1]
LN246_01175  4Fe-4S binding protein [KO:K00171] [EC:1.2.7.1]
LN246_13700  4Fe-4S binding protein [KO:K00171] [EC:1.2.7.1]
LN246_04555  nifJ; pyruvate:ferredoxin (flavodoxin) oxidoreductase [KO:K03737] [EC:1.2.7.1 1.2.7.-]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
smab00010  Glycolysis / Gluconeogenesis
smab00053  Ascorbate and aldarate metabolism
smab00061  Fatty acid biosynthesis
smab00071  Fatty acid degradation
smab00190  Oxidative phosphorylation
smab00220  Arginine biosynthesis
smab00250  Alanine, aspartate and glutamate metabolism
smab00280  Valine, leucine and isoleucine degradation
smab00350  Tyrosine metabolism
smab00470  D-Amino acid metabolism
smab00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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