KEGG   PATHWAY: smas00020
Entry
smas00020                   Pathway                                
Name
Citrate cycle (TCA cycle) - Candidatus Sulfurimonas marisnigri
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
smas00020  Citrate cycle (TCA cycle)
smas00020

Module
smas_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:smas00020]
smas_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:smas00020]
smas_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:smas00020]
smas_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:smas00020]
smas_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:smas00020]
Other DBs
GO: 0006099
Organism
Candidatus Sulfurimonas marisnigri [GN:smas]
Gene
HUE87_12545  citrate synthase [KO:K01647] [EC:2.3.3.1]
HUE87_02920  ATP citrate synthase [KO:K15230] [EC:2.3.3.8]
HUE87_02915  ATPase [KO:K15231] [EC:2.3.3.8]
HUE87_06770  acnB; bifunctional aconitate hydratase 2/2-methylisocitrate dehydratase [KO:K01682] [EC:4.2.1.3 4.2.1.99]
HUE87_06740  NADP-dependent isocitrate dehydrogenase [KO:K00031] [EC:1.1.1.42]
HUE87_05230  hypothetical protein [KO:K00382] [EC:1.8.1.4]
HUE87_11655  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
HUE87_06710  2-oxoglutarate synthase subunit alpha [KO:K00174] [EC:1.2.7.3 1.2.7.11]
HUE87_06705  2-oxoglutarate ferredoxin oxidoreductase subunit beta [KO:K00175] [EC:1.2.7.3 1.2.7.11]
HUE87_06700  2-oxoacid:acceptor oxidoreductase family protein [KO:K00177] [EC:1.2.7.3]
HUE87_06715  4Fe-4S dicluster domain-containing protein [KO:K00176] [EC:1.2.7.3]
HUE87_06720  sucD; succinate--CoA ligase subunit alpha [KO:K01902] [EC:6.2.1.5]
HUE87_06725  sucC; ADP-forming succinate--CoA ligase subunit beta [KO:K01903] [EC:6.2.1.5]
HUE87_06145  FAD-binding protein [KO:K00239] [EC:1.3.5.1]
HUE87_06140  succinate dehydrogenase/fumarate reductase iron-sulfur subunit [KO:K00240] [EC:1.3.5.1]
HUE87_06135  CoB--CoM heterodisulfide reductase iron-sulfur subunit B family protein [KO:K00241]
HUE87_06120  fumarate reductase flavoprotein subunit [KO:K00233] [EC:1.3.5.1 7.1.1.12]
HUE87_06115  fumarate reductase iron-sulfur subunit [KO:K25995] [EC:1.3.5.1 7.1.1.12]
HUE87_06125  fumarate reductase cytochrome b subunit [KO:K25996]
HUE87_06730  fumC; class II fumarate hydratase [KO:K01679] [EC:4.2.1.2]
HUE87_06735  mdh; malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
HUE87_09585  FAD-dependent oxidoreductase [KO:K00116] [EC:1.1.5.4]
HUE87_03335  acetyl-CoA carboxylase biotin carboxylase subunit [KO:K01959] [EC:6.4.1.1]
HUE87_07645  biotin attachment protein [KO:K01960] [EC:6.4.1.1]
HUE87_10275  pckA; phosphoenolpyruvate carboxykinase (ATP) [KO:K01610] [EC:4.1.1.49]
HUE87_11675  pdhA; pyruvate dehydrogenase (acetyl-transferring) E1 component subunit alpha [KO:K00161] [EC:1.2.4.1]
HUE87_11680  alpha-ketoacid dehydrogenase subunit beta [KO:K00162] [EC:1.2.4.1]
HUE87_11685  2-oxo acid dehydrogenase subunit E2 [KO:K00627] [EC:2.3.1.12]
HUE87_03685  ferredoxin oxidoreductase [KO:K00169] [EC:1.2.7.1]
HUE87_03775  ferredoxin oxidoreductase [KO:K00169] [EC:1.2.7.1]
HUE87_11520  2-oxoacid:ferredoxin oxidoreductase subunit alpha [KO:K00169] [EC:1.2.7.1]
HUE87_03690  ferredoxin oxidoreductase [KO:K00170] [EC:1.2.7.1]
HUE87_03780  ferredoxin oxidoreductase [KO:K00170] [EC:1.2.7.1]
HUE87_11515  pyruvate ferredoxin oxidoreductase [KO:K00170] [EC:1.2.7.1]
HUE87_03695  2-oxoacid:acceptor oxidoreductase family protein [KO:K00172] [EC:1.2.7.1]
HUE87_03785  2-oxoacid:acceptor oxidoreductase family protein [KO:K00172] [EC:1.2.7.1]
HUE87_11530  pyruvate flavodoxin oxidoreductase subunit gamma [KO:K00172] [EC:1.2.7.1]
HUE87_03700  ferredoxin oxidoreductase [KO:K00171] [EC:1.2.7.1]
HUE87_03765  ferredoxin oxidoreductase [KO:K00171] [EC:1.2.7.1]
HUE87_11525  4Fe-4S binding protein [KO:K00171] [EC:1.2.7.1]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
smas00010  Glycolysis / Gluconeogenesis
smas00053  Ascorbate and aldarate metabolism
smas00061  Fatty acid biosynthesis
smas00071  Fatty acid degradation
smas00190  Oxidative phosphorylation
smas00220  Arginine biosynthesis
smas00250  Alanine, aspartate and glutamate metabolism
smas00280  Valine, leucine and isoleucine degradation
smas00350  Tyrosine metabolism
smas00470  D-Amino acid metabolism
smas00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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