KEGG   PATHWAY: smax00020
Entry
smax00020                   Pathway                                
Name
Citrate cycle (TCA cycle) - Sulfurimonas marina
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
smax00020  Citrate cycle (TCA cycle)
smax00020

Module
smax_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:smax00020]
smax_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:smax00020]
smax_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:smax00020]
Other DBs
GO: 0006099
Organism
Sulfurimonas marina [GN:smax]
Gene
FJR03_03180  ATP citrate synthase [KO:K15230] [EC:2.3.3.8]
FJR03_03175  ATPase [KO:K15231] [EC:2.3.3.8]
FJR03_05985  acnB; bifunctional aconitate hydratase 2/2-methylisocitrate dehydratase [KO:K01682] [EC:4.2.1.3 4.2.1.99]
FJR03_05955  NADP-dependent isocitrate dehydrogenase [KO:K00031] [EC:1.1.1.42]
FJR03_05925  2-oxoglutarate synthase subunit alpha [KO:K00174] [EC:1.2.7.3 1.2.7.11]
FJR03_05920  2-oxoglutarate ferredoxin oxidoreductase subunit beta [KO:K00175] [EC:1.2.7.3 1.2.7.11]
FJR03_05915  oorC; 2-oxoglutarate:acceptor oxidoreductase [KO:K00177] [EC:1.2.7.3]
FJR03_05930  4Fe-4S dicluster domain-containing protein [KO:K00176] [EC:1.2.7.3]
FJR03_05935  sucD; succinate--CoA ligase subunit alpha [KO:K01902] [EC:6.2.1.5]
FJR03_05940  sucC; ADP-forming succinate--CoA ligase subunit beta [KO:K01903] [EC:6.2.1.5]
FJR03_05370  sdhA; succinate dehydrogenase flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
FJR03_05365  sdhB; succinate dehydrogenase iron-sulfur subunit [KO:K00240] [EC:1.3.5.1]
FJR03_05360  heterodisulfide reductase subunit B [KO:K00241]
FJR03_05945  fumC; class II fumarate hydratase [KO:K01679] [EC:4.2.1.2]
FJR03_05950  mdh; malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
FJR03_01970  acetyl-CoA carboxylase biotin carboxylase subunit [KO:K01959] [EC:6.4.1.1]
FJR03_07290  biotin attachment protein [KO:K01960] [EC:6.4.1.1]
FJR03_08890  pckA; phosphoenolpyruvate carboxykinase (ATP) [KO:K01610] [EC:4.1.1.49]
FJR03_06070  pdhA; pyruvate dehydrogenase (acetyl-transferring) E1 component subunit alpha [KO:K00161] [EC:1.2.4.1]
FJR03_06065  alpha-ketoacid dehydrogenase subunit beta [KO:K00162] [EC:1.2.4.1]
FJR03_10310  2-oxoacid:ferredoxin oxidoreductase subunit alpha [KO:K00169] [EC:1.2.7.1]
FJR03_10305  pyruvate ferredoxin oxidoreductase [KO:K00170] [EC:1.2.7.1]
FJR03_10320  pyruvate flavodoxin oxidoreductase subunit gamma [KO:K00172] [EC:1.2.7.1]
FJR03_10315  4Fe-4S dicluster domain-containing protein [KO:K00171] [EC:1.2.7.1]
FJR03_05530  nifJ; pyruvate:ferredoxin (flavodoxin) oxidoreductase [KO:K03737] [EC:1.2.7.1 1.2.7.-]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
smax00010  Glycolysis / Gluconeogenesis
smax00061  Fatty acid biosynthesis
smax00071  Fatty acid degradation
smax00190  Oxidative phosphorylation
smax00220  Arginine biosynthesis
smax00250  Alanine, aspartate and glutamate metabolism
smax00280  Valine, leucine and isoleucine degradation
smax00350  Tyrosine metabolism
smax00470  D-Amino acid metabolism
smax00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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