KEGG   PATHWAY: smic00630
Entry
smic00630                   Pathway                                
Name
Glyoxylate and dicarboxylate metabolism - Sphingosinicella microcystinivorans
Class
Metabolism; Carbohydrate metabolism
Pathway map
smic00630  Glyoxylate and dicarboxylate metabolism
smic00630

Module
smic_M00012  Glyoxylate cycle [PATH:smic00630]
smic_M00621  Glycine cleavage system [PATH:smic00630]
smic_M00741  Propanoyl-CoA metabolism, propanoyl-CoA => succinyl-CoA [PATH:smic00630]
Other DBs
GO: 0046487 0043648
Organism
Sphingosinicella microcystinivorans [GN:smic]
Gene
SmB9_14490  isocitrate lyase [KO:K01637] [EC:4.1.3.1]
SmB9_08150  acsA_1; acetyl-coenzyme A synthetase [KO:K01895] [EC:6.2.1.1]
SmB9_17230  acsA_2; acetyl-coenzyme A synthetase [KO:K01895] [EC:6.2.1.1]
SmB9_03970  glcB; malate synthase G [KO:K01638] [EC:2.3.3.9]
SmB9_22290  mdh; malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
SmB9_19980  citryl-CoA lyase [KO:K01647] [EC:2.3.3.1]
SmB9_25660  gltA; citrate synthase [KO:K01647] [EC:2.3.3.1]
SmB9_02850  aconitate hydratase [KO:K01681] [EC:4.2.1.3]
SmB9_11780  aconitate hydratase [KO:K01681] [EC:4.2.1.3]
SmB9_28800  acetyl-CoA acetyltransferase [KO:K00626] [EC:2.3.1.9]
SmB9_27460  acetyl-CoA acetyltransferase [KO:K00626] [EC:2.3.1.9]
SmB9_36020  acetyl-CoA acetyltransferase [KO:K00626] [EC:2.3.1.9]
SmB9_36300  fadA_2; acetyl-CoA acetyltransferase [KO:K00626] [EC:2.3.1.9]
SmB9_10250  acetyl-CoA acetyltransferase [KO:K00626] [EC:2.3.1.9]
SmB9_35460  acetyl-CoA acetyltransferase [KO:K00626] [EC:2.3.1.9]
SmB9_24060  acetyl-CoA acetyltransferase [KO:K00626] [EC:2.3.1.9]
SmB9_35560  beta-ketoacyl-ACP reductase [KO:K00023] [EC:1.1.1.36]
SmB9_17060  lactoylglutathione lyase [KO:K05606] [EC:5.1.99.1]
SmB9_16010  pccA; acetyl/propionyl-CoA carboxylase subuit alpha [KO:K01965] [EC:6.4.1.3]
SmB9_16070  methylmalonyl-CoA carboxyltransferase [KO:K01966] [EC:6.4.1.3 2.1.3.15]
SmB9_36660  mcmA; methylmalonyl-CoA mutase [KO:K01847] [EC:5.4.99.2]
SmB9_14200  D-glycerate dehydrogenase [KO:K00015] [EC:1.1.1.26]
SmB9_17360  glyoxylate/hydroxypyruvate reductase A [KO:K12972] [EC:1.1.1.79 1.1.1.81]
SmB9_16110  haloacid dehalogenase [KO:K01091] [EC:3.1.3.18]
SmB9_34370  phosphoglycolate phosphatase, bacterial [KO:K01091] [EC:3.1.3.18]
SmB9_29940  glutamine synthetase [KO:K01915] [EC:6.3.1.2]
SmB9_29970  glnA3_2; glutamine synthetase [KO:K01915] [EC:6.3.1.2]
SmB9_23820  glnA3_1; glutamine synthetase [KO:K01915] [EC:6.3.1.2]
SmB9_18510  glyA; serine hydroxymethyltransferase [KO:K00600] [EC:2.1.2.1]
SmB9_22650  glyA2; serine hydroxymethyltransferase 2 [KO:K00600] [EC:2.1.2.1]
SmB9_04150  gcvPA; putative glycine dehydrogenase (decarboxylating) subunit 1 [KO:K00282] [EC:1.4.4.2]
SmB9_04140  glycine dehydrogenase (aminomethyl-transferring) [KO:K00283] [EC:1.4.4.2]
SmB9_04180  gcvT2; aminomethyltransferase [KO:K00605] [EC:2.1.2.10]
SmB9_26330  dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
SmB9_22350  lpdA1; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
SmB9_04170  gcvH; glycine cleavage system H protein [KO:K02437]
SmB9_17390  tartrate dehydrogenase [KO:K07246] [EC:1.1.1.93 4.1.1.73 1.1.1.83]
SmB9_03600  NAD-dependent formate dehydrogenase [KO:K00126] [EC:1.17.1.9]
SmB9_03590  fdhF; formate dehydrogenase subunit alpha [KO:K00123] [EC:1.17.1.9]
SmB9_03580  nuoF; formate dehydrogenase subunit beta [KO:K00124]
SmB9_03570  nuoE; NADH-quinone oxidoreductase subunit E [KO:K00127]
SmB9_20050  esterase [KO:K01432] [EC:3.5.1.9]
SmB9_25100  esterase [KO:K01432] [EC:3.5.1.9]
SmB9_37640  purU_2; formyltetrahydrofolate deformylase [KO:K01433] [EC:3.5.1.10]
SmB9_03620  purU_1; formyltetrahydrofolate deformylase [KO:K01433] [EC:3.5.1.10]
SmB9_23480  N-formylglutamate deformylase [KO:K01458] [EC:3.5.1.68]
Compound
C00007  Oxygen
C00011  CO2
C00014  Ammonia
C00022  Pyruvate
C00024  Acetyl-CoA
C00025  L-Glutamate
C00026  2-Oxoglutarate
C00027  Hydrogen peroxide
C00033  Acetate
C00036  Oxaloacetate
C00037  Glycine
C00042  Succinate
C00048  Glyoxylate
C00058  Formate
C00064  L-Glutamine
C00065  L-Serine
C00091  Succinyl-CoA
C00100  Propanoyl-CoA
C00111  Glycerone phosphate
C00136  Butanoyl-CoA
C00149  (S)-Malate
C00158  Citrate
C00160  Glycolate
C00168  Hydroxypyruvate
C00197  3-Phospho-D-glycerate
C00209  Oxalate
C00258  D-Glycerate
C00266  Glycolaldehyde
C00311  Isocitrate
C00313  Oxalyl-CoA
C00332  Acetoacetyl-CoA
C00417  cis-Aconitate
C00552  meso-Tartaric acid
C00631  2-Phospho-D-glycerate
C00683  (S)-Methylmalonyl-CoA
C00798  Formyl-CoA
C00877  Crotonoyl-CoA
C00888  Pentanoyl-CoA
C00898  (R,R)-Tartaric acid
C00975  Dihydroxyfumarate
C00988  2-Phosphoglycolate
C01127  4-Hydroxy-2-oxoglutarate
C01146  2-Hydroxy-3-oxopropanoate
C01182  D-Ribulose 1,5-bisphosphate
C01213  (R)-Methylmalonyl-CoA
C01380  Ethylene glycol
C01732  Mesaconate
C01989  3-Ethylmalate
C01990  3-Oxalomalate
C02123  3-Propylmalate
C02405  Formyl phosphate
C03217  2-Hydroxy-3-oxoadipate
C03459  2-Hydroxy-3-oxosuccinate
C03548  trans-2,3-Epoxysuccinate
C03561  (R)-3-Hydroxybutanoyl-CoA
C03618  L-threo-3-Methylaspartate
C04348  L-Malyl-CoA
C06027  L-erythro-3-Methylmalyl-CoA
C06028  2-Methylfumaryl-CoA
C06049  N-Formylderivatives
C18026  (2S)-Ethylmalonyl-CoA
C18324  (2S)-Methylsuccinyl-CoA
C20238  (2R)-Ethylmalonyl-CoA
C22337  D-Ribulose 1-phosphate
Reference
PMID:10978349
  Authors
Njau RK, Herndon CA, Hawes JW.
  Title
Novel beta-hydroxyacid dehydrogenases in Escherichia coli and Haemophilus influenzae.
  Journal
J Biol Chem 275:38780-6 (2000)
DOI:10.1074/jbc.M007432200
Reference
PMID:18065535
  Authors
Zarzycki J, Schlichting A, Strychalsky N, Muller M, Alber BE, Fuchs G
  Title
Mesaconyl-coenzyme A hydratase, a new enzyme of two central carbon metabolic pathways in bacteria.
  Journal
J Bacteriol 190:1366-74 (2008)
DOI:10.1128/JB.01621-07
Reference
PMID:18819910
  Authors
Erb TJ, Retey J, Fuchs G, Alber BE
  Title
Ethylmalonyl-CoA mutase from Rhodobacter sphaeroides defines a new subclade of coenzyme B12-dependent acyl-CoA mutases.
  Journal
J Biol Chem 283:32283-93 (2008)
DOI:10.1074/jbc.M805527200
Reference
PMID:9596633
  Authors
Coschigano KT, Melo-Oliveira R, Lim J, Coruzzi GM
  Title
Arabidopsis gls mutants and distinct Fd-GOGAT genes. Implications for photorespiration and primary nitrogen assimilation.
  Journal
Plant Cell 10:741-52 (1998)
DOI:10.1105/tpc.10.5.741
Reference
PMID:16407450
  Authors
Masclaux-Daubresse C, Reisdorf-Cren M, Pageau K, Lelandais M, Grandjean O, Kronenberger J, Valadier MH, Feraud M, Jouglet T, Suzuki A
  Title
Glutamine synthetase-glutamate synthase pathway and glutamate dehydrogenase play distinct roles in the sink-source nitrogen cycle in tobacco.
  Journal
Plant Physiol 140:444-56 (2006)
DOI:10.1104/pp.105.071910
Reference
PMID:21252347
  Authors
Khomyakova M, Bukmez O, Thomas LK, Erb TJ, Berg IA
  Title
A methylaspartate cycle in haloarchaea.
  Journal
Science 331:334-7 (2011)
DOI:10.1126/science.1196544
Reference
PMID:11513957
  Authors
Serrano JA, Bonete MJ
  Title
Sequencing, phylogenetic and transcriptional analysis of the glyoxylate bypass operon (ace) in the halophilic archaeon Haloferax volcanii.
  Journal
Biochim Biophys Acta 1520:154-62 (2001)
DOI:10.1016/S0167-4781(01)00263-9
Related
pathway
smic00010  Glycolysis / Gluconeogenesis
smic00020  Citrate cycle (TCA cycle)
smic00030  Pentose phosphate pathway
smic00053  Ascorbate and aldarate metabolism
smic00071  Fatty acid degradation
smic00230  Purine metabolism
smic00250  Alanine, aspartate and glutamate metabolism
smic00260  Glycine, serine and threonine metabolism
smic00620  Pyruvate metabolism
smic00710  Carbon fixation by Calvin cycle
smic00750  Vitamin B6 metabolism
smic00910  Nitrogen metabolism
KO pathway
ko00630   
LinkDB

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