KEGG   PATHWAY: smil00630
Entry
smil00630                   Pathway                                
Name
Glyoxylate and dicarboxylate metabolism - Salvia miltiorrhiza (redroot sage)
Class
Metabolism; Carbohydrate metabolism
Pathway map
smil00630  Glyoxylate and dicarboxylate metabolism
smil00630

Module
smil_M00012  Glyoxylate cycle [PATH:smil00630]
smil_M00532  Photorespiration [PATH:smil00630]
smil_M00621  Glycine cleavage system [PATH:smil00630]
Other DBs
GO: 0046487 0043648
Organism
Salvia miltiorrhiza (redroot sage) [GN:smil]
Gene
131009210  isocitrate lyase [KO:K01637] [EC:4.1.3.1]
131015973  acetyl-coenzyme A synthetase, chloroplastic/glyoxysomal [KO:K01895] [EC:6.2.1.1]
131025600  uncharacterized protein LOC131025600 [KO:K01913] [EC:6.2.1.1 6.2.1.2]
131003133  acetate--CoA ligase CCL3-like isoform X1 [KO:K01913] [EC:6.2.1.1 6.2.1.2]
131021018  acetate--CoA ligase CCL3-like [KO:K01913] [EC:6.2.1.1 6.2.1.2]
130994342  malate synthase, glyoxysomal-like [KO:K01638] [EC:2.3.3.9]
130994343  malate synthase, glyoxysomal-like [KO:K01638] [EC:2.3.3.9]
131011365  malate synthase, glyoxysomal-like [KO:K01638] [EC:2.3.3.9]
131021608  malate synthase, glyoxysomal-like [KO:K01638] [EC:2.3.3.9]
131021635  malate synthase, glyoxysomal-like [KO:K01638] [EC:2.3.3.9]
130999789  malate dehydrogenase isoform X1 [KO:K00025] [EC:1.1.1.37]
131001199  malate dehydrogenase-like [KO:K00025] [EC:1.1.1.37]
131020616  malate dehydrogenase, cytoplasmic-like [KO:K00025] [EC:1.1.1.37]
131008965  malate dehydrogenase, chloroplastic [KO:K00026] [EC:1.1.1.37]
131012052  malate dehydrogenase, mitochondrial-like [KO:K00026] [EC:1.1.1.37]
131012055  malate dehydrogenase, mitochondrial-like [KO:K00026] [EC:1.1.1.37]
131001798  malate dehydrogenase, glyoxysomal [KO:K00026] [EC:1.1.1.37]
131020408  malate dehydrogenase, chloroplastic-like isoform X1 [KO:K00026] [EC:1.1.1.37]
131005213  malate dehydrogenase, glyoxysomal-like [KO:K00026] [EC:1.1.1.37]
131009090  citrate synthase, glyoxysomal-like [KO:K01647] [EC:2.3.3.1]
131012260  citrate synthase, glyoxysomal-like [KO:K01647] [EC:2.3.3.1]
131024313  LOW QUALITY PROTEIN: putative aconitate hydratase, cytoplasmic [KO:K01681] [EC:4.2.1.3]
131009346  aconitate hydratase, cytoplasmic isoform X1 [KO:K01681] [EC:4.2.1.3]
131009528  LOW QUALITY PROTEIN: acetyl-CoA acetyltransferase 2-like [KO:K00626] [EC:2.3.1.9]
130985934  acetyl-CoA acetyltransferase 2 isoform X1 [KO:K00626] [EC:2.3.1.9]
130985188  glycolate oxidase [KO:K11517] [EC:1.1.3.15]
131012093  glycolate oxidase 1 [KO:K11517] [EC:1.1.3.15]
131012157  glycolate oxidase 1-like [KO:K11517] [EC:1.1.3.15]
130995012  LOW QUALITY PROTEIN: catalase isozyme 2-like [KO:K03781] [EC:1.11.1.6]
131010978  catalase [KO:K03781] [EC:1.11.1.6]
131026344  glyoxylate/hydroxypyruvate reductase HPR3 [KO:K15919] [EC:1.1.1.79 1.1.1.81]
131013148  glyoxylate/succinic semialdehyde reductase 2, chloroplastic isoform X1 [KO:K18121] [EC:1.1.1.79 1.1.1.-]
131006507  glyoxylate/succinic semialdehyde reductase 1 [KO:K18121] [EC:1.1.1.79 1.1.1.-]
131013402  glycerate dehydrogenase HPR, peroxisomal [KO:K15893] [EC:1.1.1.29]
131013433  glycerate dehydrogenase HPR, peroxisomal-like [KO:K15893] [EC:1.1.1.29]
130985941  phosphoglycolate phosphatase 2 [KO:K19269] [EC:3.1.3.18 3.1.3.48]
131001871  phosphoglycolate phosphatase 1A, chloroplastic-like [KO:K19269] [EC:3.1.3.18 3.1.3.48]
14676020  rbcL; ribulose-1,5-bisphosphate carboxylase/oxygenase large subunit [KO:K01601] [EC:4.1.1.39]
18126268  rbcL; ribulose-1,5-bisphosphate carboxylase/oxygenase large subunit [KO:K01601] [EC:4.1.1.39]
131020307  ribulose bisphosphate carboxylase small subunit, chloroplastic-like [KO:K01602] [EC:4.1.1.39]
131020308  ribulose bisphosphate carboxylase small subunit, chloroplastic-like [KO:K01602] [EC:4.1.1.39]
131020309  ribulose bisphosphate carboxylase small subunit, chloroplastic-like [KO:K01602] [EC:4.1.1.39]
131006822  serine--glyoxylate aminotransferase isoform X1 [KO:K00830] [EC:2.6.1.44 2.6.1.45 2.6.1.51]
131025328  glutamate--glyoxylate aminotransferase 2 [KO:K14272] [EC:2.6.1.4 2.6.1.2 2.6.1.44]
131002714  ferredoxin-dependent glutamate synthase, chloroplastic-like [KO:K00284] [EC:1.4.7.1]
130987957  glutamine synthetase nodule isozyme-like [KO:K01915] [EC:6.3.1.2]
131001629  glutamine synthetase cytosolic isozyme [KO:K01915] [EC:6.3.1.2]
131020940  glutamine synthetase leaf isozyme, chloroplastic-like [KO:K01915] [EC:6.3.1.2]
131021923  glutamine synthetase-like [KO:K01915] [EC:6.3.1.2]
130991576  glutamine synthetase, chloroplastic [KO:K01915] [EC:6.3.1.2]
131010621  serine hydroxymethyltransferase 2, mitochondrial isoform X1 [KO:K00600] [EC:2.1.2.1]
130986734  serine hydroxymethyltransferase 4-like [KO:K00600] [EC:2.1.2.1]
131001323  LOW QUALITY PROTEIN: serine hydroxymethyltransferase 4 [KO:K00600] [EC:2.1.2.1]
131001763  serine hydroxymethyltransferase, mitochondrial [KO:K00600] [EC:2.1.2.1]
131019027  serine hydroxymethyltransferase 7-like [KO:K00600] [EC:2.1.2.1]
130991382  serine hydroxymethyltransferase 3, chloroplastic isoform X1 [KO:K00600] [EC:2.1.2.1]
130994794  glycine dehydrogenase (decarboxylating), mitochondrial-like [KO:K00281] [EC:1.4.4.2]
130994795  glycine dehydrogenase (decarboxylating), mitochondrial [KO:K00281] [EC:1.4.4.2]
130985809  aminomethyltransferase, mitochondrial [KO:K00605] [EC:2.1.2.10]
130997493  dihydrolipoyl dehydrogenase 2, chloroplastic-like [KO:K00382] [EC:1.8.1.4]
131003128  dihydrolipoyl dehydrogenase 2, chloroplastic-like [KO:K00382] [EC:1.8.1.4]
131021055  dihydrolipoyl dehydrogenase 1, mitochondrial-like [KO:K00382] [EC:1.8.1.4]
131021059  LOW QUALITY PROTEIN: leghemoglobin reductase-like [KO:K00382] [EC:1.8.1.4]
131026275  glycine cleavage system H protein 2, mitochondrial [KO:K02437]
131013040  glycine cleavage system H protein 2, mitochondrial-like isoform X1 [KO:K02437]
131019921  glycine cleavage system H protein 3, mitochondrial-like [KO:K02437]
130988714  glycine cleavage system H protein, mitochondrial-like [KO:K02437]
130992379  D-glycerate 3-kinase, chloroplastic isoform X1 [KO:K15918] [EC:2.7.1.31]
130989411  formate dehydrogenase, mitochondrial [KO:K00122] [EC:1.17.1.9]
131004366  formyltetrahydrofolate deformylase 1, mitochondrial-like [KO:K01433] [EC:3.5.1.10]
131021541  uncharacterized protein LOC131021541 isoform X1 [KO:K01455] [EC:3.5.1.49]
Compound
C00007  Oxygen
C00011  CO2
C00014  Ammonia
C00022  Pyruvate
C00024  Acetyl-CoA
C00025  L-Glutamate
C00026  2-Oxoglutarate
C00027  Hydrogen peroxide
C00033  Acetate
C00036  Oxaloacetate
C00037  Glycine
C00042  Succinate
C00048  Glyoxylate
C00058  Formate
C00064  L-Glutamine
C00065  L-Serine
C00091  Succinyl-CoA
C00100  Propanoyl-CoA
C00111  Glycerone phosphate
C00136  Butanoyl-CoA
C00149  (S)-Malate
C00158  Citrate
C00160  Glycolate
C00168  Hydroxypyruvate
C00197  3-Phospho-D-glycerate
C00209  Oxalate
C00258  D-Glycerate
C00266  Glycolaldehyde
C00311  Isocitrate
C00313  Oxalyl-CoA
C00332  Acetoacetyl-CoA
C00417  cis-Aconitate
C00552  meso-Tartaric acid
C00631  2-Phospho-D-glycerate
C00683  (S)-Methylmalonyl-CoA
C00798  Formyl-CoA
C00877  Crotonoyl-CoA
C00888  Pentanoyl-CoA
C00898  (R,R)-Tartaric acid
C00975  Dihydroxyfumarate
C00988  2-Phosphoglycolate
C01127  4-Hydroxy-2-oxoglutarate
C01146  2-Hydroxy-3-oxopropanoate
C01182  D-Ribulose 1,5-bisphosphate
C01213  (R)-Methylmalonyl-CoA
C01380  Ethylene glycol
C01732  Mesaconate
C01989  3-Ethylmalate
C01990  3-Oxalomalate
C02123  3-Propylmalate
C02405  Formyl phosphate
C03217  2-Hydroxy-3-oxoadipate
C03459  2-Hydroxy-3-oxosuccinate
C03548  trans-2,3-Epoxysuccinate
C03561  (R)-3-Hydroxybutanoyl-CoA
C03618  L-threo-3-Methylaspartate
C04348  L-Malyl-CoA
C06027  L-erythro-3-Methylmalyl-CoA
C06028  2-Methylfumaryl-CoA
C06049  N-Formylderivatives
C18026  (2S)-Ethylmalonyl-CoA
C18324  (2S)-Methylsuccinyl-CoA
C20238  (2R)-Ethylmalonyl-CoA
C22337  D-Ribulose 1-phosphate
Reference
PMID:10978349
  Authors
Njau RK, Herndon CA, Hawes JW.
  Title
Novel beta-hydroxyacid dehydrogenases in Escherichia coli and Haemophilus influenzae.
  Journal
J Biol Chem 275:38780-6 (2000)
DOI:10.1074/jbc.M007432200
Reference
PMID:18065535
  Authors
Zarzycki J, Schlichting A, Strychalsky N, Muller M, Alber BE, Fuchs G
  Title
Mesaconyl-coenzyme A hydratase, a new enzyme of two central carbon metabolic pathways in bacteria.
  Journal
J Bacteriol 190:1366-74 (2008)
DOI:10.1128/JB.01621-07
Reference
PMID:18819910
  Authors
Erb TJ, Retey J, Fuchs G, Alber BE
  Title
Ethylmalonyl-CoA mutase from Rhodobacter sphaeroides defines a new subclade of coenzyme B12-dependent acyl-CoA mutases.
  Journal
J Biol Chem 283:32283-93 (2008)
DOI:10.1074/jbc.M805527200
Reference
PMID:9596633
  Authors
Coschigano KT, Melo-Oliveira R, Lim J, Coruzzi GM
  Title
Arabidopsis gls mutants and distinct Fd-GOGAT genes. Implications for photorespiration and primary nitrogen assimilation.
  Journal
Plant Cell 10:741-52 (1998)
DOI:10.1105/tpc.10.5.741
Reference
PMID:16407450
  Authors
Masclaux-Daubresse C, Reisdorf-Cren M, Pageau K, Lelandais M, Grandjean O, Kronenberger J, Valadier MH, Feraud M, Jouglet T, Suzuki A
  Title
Glutamine synthetase-glutamate synthase pathway and glutamate dehydrogenase play distinct roles in the sink-source nitrogen cycle in tobacco.
  Journal
Plant Physiol 140:444-56 (2006)
DOI:10.1104/pp.105.071910
Reference
PMID:21252347
  Authors
Khomyakova M, Bukmez O, Thomas LK, Erb TJ, Berg IA
  Title
A methylaspartate cycle in haloarchaea.
  Journal
Science 331:334-7 (2011)
DOI:10.1126/science.1196544
Reference
PMID:11513957
  Authors
Serrano JA, Bonete MJ
  Title
Sequencing, phylogenetic and transcriptional analysis of the glyoxylate bypass operon (ace) in the halophilic archaeon Haloferax volcanii.
  Journal
Biochim Biophys Acta 1520:154-62 (2001)
DOI:10.1016/S0167-4781(01)00263-9
Related
pathway
smil00010  Glycolysis / Gluconeogenesis
smil00020  Citrate cycle (TCA cycle)
smil00030  Pentose phosphate pathway
smil00053  Ascorbate and aldarate metabolism
smil00071  Fatty acid degradation
smil00230  Purine metabolism
smil00250  Alanine, aspartate and glutamate metabolism
smil00260  Glycine, serine and threonine metabolism
smil00620  Pyruvate metabolism
smil00710  Carbon fixation by Calvin cycle
smil00750  Vitamin B6 metabolism
smil00910  Nitrogen metabolism
KO pathway
ko00630   
LinkDB

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