KEGG   PATHWAY: snap00630
Entry
snap00630                   Pathway                                
Name
Glyoxylate and dicarboxylate metabolism - Sphingomonas naphthae
Class
Metabolism; Carbohydrate metabolism
Pathway map
snap00630  Glyoxylate and dicarboxylate metabolism
snap00630

Module
snap_M00012  Glyoxylate cycle [PATH:snap00630]
snap_M00621  Glycine cleavage system [PATH:snap00630]
snap_M00741  Propanoyl-CoA metabolism, propanoyl-CoA => succinyl-CoA [PATH:snap00630]
Other DBs
GO: 0046487 0043648
Organism
Sphingomonas naphthae [GN:snap]
Gene
PQ455_05725  isocitrate lyase [KO:K01637] [EC:4.1.3.1 4.1.3.30]
PQ455_08660  acs; acetate--CoA ligase [KO:K01895] [EC:6.2.1.1]
PQ455_16560  acs; acetate--CoA ligase [KO:K01895] [EC:6.2.1.1]
PQ455_18120  AMP-binding protein [KO:K01895] [EC:6.2.1.1]
PQ455_06170  malate synthase G [KO:K01638] [EC:2.3.3.9]
PQ455_02290  mdh; malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
PQ455_09015  citrate synthase [KO:K01647] [EC:2.3.3.1]
PQ455_18395  acnA; aconitate hydratase AcnA [KO:K27802] [EC:4.2.1.3 4.2.1.99]
PQ455_16050  bifunctional aconitate hydratase 2/2-methylisocitrate dehydratase [KO:K01682] [EC:4.2.1.3 4.2.1.99]
PQ455_10815  acetyl-CoA C-acetyltransferase [KO:K00626] [EC:2.3.1.9]
PQ455_10960  acetyl-CoA C-acyltransferase family protein [KO:K00626] [EC:2.3.1.9]
PQ455_18665  acetyl-CoA C-acetyltransferase [KO:K00626] [EC:2.3.1.9]
PQ455_18675  acetyl-CoA C-acyltransferase [KO:K00626] [EC:2.3.1.9]
PQ455_03300  phbB; acetoacetyl-CoA reductase [KO:K00023] [EC:1.1.1.36]
PQ455_01300  mce; methylmalonyl-CoA epimerase [KO:K05606] [EC:5.1.99.1]
PQ455_01285  acetyl/propionyl/methylcrotonyl-CoA carboxylase subunit alpha [KO:K01965] [EC:6.4.1.3]
PQ455_01310  acyl-CoA carboxylase subunit beta [KO:K01966] [EC:6.4.1.3 2.1.3.15]
PQ455_01295  scpA; methylmalonyl-CoA mutase [KO:K01847] [EC:5.4.99.2]
PQ455_12570  FAD-linked oxidase C-terminal domain-containing protein [KO:K00104] [EC:1.1.99.14]
PQ455_12565  FAD-binding protein [KO:K11472] [EC:1.1.99.14]
PQ455_12560  glcF; glycolate oxidase subunit GlcF [KO:K11473] [EC:1.1.99.14]
PQ455_13315  catalase [KO:K03781] [EC:1.11.1.6]
PQ455_04280  catalase [KO:K03781] [EC:1.11.1.6]
PQ455_16365  D-glycerate dehydrogenase [KO:K00015] [EC:1.1.1.26]
PQ455_15805  glyoxylate/hydroxypyruvate reductase A [KO:K12972] [EC:1.1.1.79 1.1.1.81]
PQ455_09660  HAD-IA family hydrolase [KO:K01091] [EC:3.1.3.18]
PQ455_05670  gph; phosphoglycolate phosphatase [KO:K01091] [EC:3.1.3.18]
PQ455_12165  glnA; type I glutamate--ammonia ligase [KO:K01915] [EC:6.3.1.2]
PQ455_05710  serine hydroxymethyltransferase [KO:K00600] [EC:2.1.2.1]
PQ455_09265  gcvPA; aminomethyl-transferring glycine dehydrogenase subunit GcvPA [KO:K00282] [EC:1.4.4.2]
PQ455_09260  gcvPB; aminomethyl-transferring glycine dehydrogenase subunit GcvPB [KO:K00283] [EC:1.4.4.2]
PQ455_09275  gcvT; glycine cleavage system aminomethyltransferase GcvT [KO:K00605] [EC:2.1.2.10]
PQ455_15210  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
PQ455_02260  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
PQ455_09270  gcvH; glycine cleavage system protein GcvH [KO:K02437]
PQ455_02585  TIM barrel protein [KO:K01816] [EC:5.3.1.22]
PQ455_02580  2-hydroxy-3-oxopropionate reductase [KO:K00042] [EC:1.1.1.60]
PQ455_02645  glycerate kinase [KO:K11529] [EC:2.7.1.165]
PQ455_02690  DUF4147 domain-containing protein [KO:K11529] [EC:2.7.1.165]
PQ455_05880  eda; bifunctional 4-hydroxy-2-oxoglutarate aldolase/2-dehydro-3-deoxy-phosphogluconate aldolase [KO:K01625] [EC:4.1.2.14 4.1.3.42]
PQ455_19245  cupin domain-containing protein [KO:K01569] [EC:4.1.1.2]
Compound
C00007  Oxygen
C00011  CO2
C00014  Ammonia
C00022  Pyruvate
C00024  Acetyl-CoA
C00025  L-Glutamate
C00026  2-Oxoglutarate
C00027  Hydrogen peroxide
C00033  Acetate
C00036  Oxaloacetate
C00037  Glycine
C00042  Succinate
C00048  Glyoxylate
C00058  Formate
C00064  L-Glutamine
C00065  L-Serine
C00091  Succinyl-CoA
C00100  Propanoyl-CoA
C00111  Glycerone phosphate
C00136  Butanoyl-CoA
C00149  (S)-Malate
C00158  Citrate
C00160  Glycolate
C00168  Hydroxypyruvate
C00197  3-Phospho-D-glycerate
C00209  Oxalate
C00258  D-Glycerate
C00266  Glycolaldehyde
C00311  Isocitrate
C00313  Oxalyl-CoA
C00332  Acetoacetyl-CoA
C00417  cis-Aconitate
C00552  meso-Tartaric acid
C00631  2-Phospho-D-glycerate
C00683  (S)-Methylmalonyl-CoA
C00798  Formyl-CoA
C00877  Crotonoyl-CoA
C00888  Pentanoyl-CoA
C00898  (R,R)-Tartaric acid
C00975  Dihydroxyfumarate
C00988  2-Phosphoglycolate
C01127  4-Hydroxy-2-oxoglutarate
C01146  2-Hydroxy-3-oxopropanoate
C01182  D-Ribulose 1,5-bisphosphate
C01213  (R)-Methylmalonyl-CoA
C01380  Ethylene glycol
C01732  Mesaconate
C01989  3-Ethylmalate
C01990  3-Oxalomalate
C02123  3-Propylmalate
C02405  Formyl phosphate
C03217  2-Hydroxy-3-oxoadipate
C03459  2-Hydroxy-3-oxosuccinate
C03548  trans-2,3-Epoxysuccinate
C03561  (R)-3-Hydroxybutanoyl-CoA
C03618  L-threo-3-Methylaspartate
C04348  L-Malyl-CoA
C06027  L-erythro-3-Methylmalyl-CoA
C06028  2-Methylfumaryl-CoA
C06049  N-Formylderivatives
C18026  (2S)-Ethylmalonyl-CoA
C18324  (2S)-Methylsuccinyl-CoA
C20238  (2R)-Ethylmalonyl-CoA
C22337  D-Ribulose 1-phosphate
Reference
PMID:10978349
  Authors
Njau RK, Herndon CA, Hawes JW.
  Title
Novel beta-hydroxyacid dehydrogenases in Escherichia coli and Haemophilus influenzae.
  Journal
J Biol Chem 275:38780-6 (2000)
DOI:10.1074/jbc.M007432200
Reference
PMID:18065535
  Authors
Zarzycki J, Schlichting A, Strychalsky N, Muller M, Alber BE, Fuchs G
  Title
Mesaconyl-coenzyme A hydratase, a new enzyme of two central carbon metabolic pathways in bacteria.
  Journal
J Bacteriol 190:1366-74 (2008)
DOI:10.1128/JB.01621-07
Reference
PMID:18819910
  Authors
Erb TJ, Retey J, Fuchs G, Alber BE
  Title
Ethylmalonyl-CoA mutase from Rhodobacter sphaeroides defines a new subclade of coenzyme B12-dependent acyl-CoA mutases.
  Journal
J Biol Chem 283:32283-93 (2008)
DOI:10.1074/jbc.M805527200
Reference
PMID:9596633
  Authors
Coschigano KT, Melo-Oliveira R, Lim J, Coruzzi GM
  Title
Arabidopsis gls mutants and distinct Fd-GOGAT genes. Implications for photorespiration and primary nitrogen assimilation.
  Journal
Plant Cell 10:741-52 (1998)
DOI:10.1105/tpc.10.5.741
Reference
PMID:16407450
  Authors
Masclaux-Daubresse C, Reisdorf-Cren M, Pageau K, Lelandais M, Grandjean O, Kronenberger J, Valadier MH, Feraud M, Jouglet T, Suzuki A
  Title
Glutamine synthetase-glutamate synthase pathway and glutamate dehydrogenase play distinct roles in the sink-source nitrogen cycle in tobacco.
  Journal
Plant Physiol 140:444-56 (2006)
DOI:10.1104/pp.105.071910
Reference
PMID:21252347
  Authors
Khomyakova M, Bukmez O, Thomas LK, Erb TJ, Berg IA
  Title
A methylaspartate cycle in haloarchaea.
  Journal
Science 331:334-7 (2011)
DOI:10.1126/science.1196544
Reference
PMID:11513957
  Authors
Serrano JA, Bonete MJ
  Title
Sequencing, phylogenetic and transcriptional analysis of the glyoxylate bypass operon (ace) in the halophilic archaeon Haloferax volcanii.
  Journal
Biochim Biophys Acta 1520:154-62 (2001)
DOI:10.1016/S0167-4781(01)00263-9
Related
pathway
snap00010  Glycolysis / Gluconeogenesis
snap00020  Citrate cycle (TCA cycle)
snap00030  Pentose phosphate pathway
snap00053  Ascorbate and aldarate metabolism
snap00071  Fatty acid degradation
snap00230  Purine metabolism
snap00250  Alanine, aspartate and glutamate metabolism
snap00260  Glycine, serine and threonine metabolism
snap00620  Pyruvate metabolism
snap00710  Carbon fixation by Calvin cycle
snap00750  Vitamin B6 metabolism
snap00910  Nitrogen metabolism
KO pathway
ko00630   
LinkDB

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