KEGG   PATHWAY: snea02010
Entry
snea02010                   Pathway                                
Name
ABC transporters - Sneathiella marina
Description
The ATP-binding cassette (ABC) transporters form one of the largest known protein families, and are widespread in bacteria, archaea, and eukaryotes. They couple ATP hydrolysis to active transport of a wide variety of substrates such as ions, sugars, lipids, sterols, peptides, proteins, and drugs. The structure of a prokaryotic ABC transporter usually consists of three components; typically two integral membrane proteins each having six transmembrane segments, two peripheral proteins that bind and hydrolyze ATP, and a periplasmic (or lipoprotein) substrate-binding protein. Many of the genes for the three components form operons as in fact observed in many bacterial and archaeal genomes. On the other hand, in a typical eukaryotic ABC transporter, the membrane spanning protein and the ATP-binding protein are fused, forming a multi-domain protein with the membrane-spanning domain (MSD) and the nucleotide-binding domain (NBD).
Class
Environmental Information Processing; Membrane transport
Pathway map
snea02010  ABC transporters
snea02010

Other DBs
GO: 0043190 0043191 0043192
TC: 3.A.1
Organism
Sneathiella marina [GN:snea]
Gene
NBZ79_15925  substrate-binding domain-containing protein [KO:K05772]
NBZ79_15935  ABC transporter permease [KO:K05773]
NBZ79_15930  ATP-binding cassette domain-containing protein [KO:K06857] [EC:7.3.2.6]
NBZ79_10940  ABC transporter substrate-binding protein [KO:K15598]
NBZ79_10935  ABC transporter permease [KO:K15599]
NBZ79_10930  ABC transporter ATP-binding protein [KO:K15600]
NBZ79_05250  modA; molybdate ABC transporter substrate-binding protein [KO:K02020]
NBZ79_12285  modB; molybdate ABC transporter permease subunit [KO:K02018]
NBZ79_12290  modC; molybdenum ABC transporter ATP-binding protein [KO:K02017] [EC:7.3.2.5]
NBZ79_11420  putative 2-aminoethylphosphonate ABC transporter substrate-binding protein [KO:K02012]
NBZ79_16550  Fe(3+) ABC transporter substrate-binding protein [KO:K02012]
NBZ79_11410  putative 2-aminoethylphosphonate ABC transporter permease subunit [KO:K02011]
NBZ79_11920  iron ABC transporter permease [KO:K02011]
NBZ79_11415  putative 2-aminoethylphosphonate ABC transporter ATP-binding protein [KO:K02010] [EC:7.2.2.7]
NBZ79_11915  ABC transporter ATP-binding protein [KO:K02010] [EC:7.2.2.7]
NBZ79_02865  extracellular solute-binding protein [KO:K11069]
NBZ79_02850  ABC transporter permease [KO:K11070]
NBZ79_02855  ABC transporter permease [KO:K11071]
NBZ79_02860  ABC transporter ATP-binding protein [KO:K11072] [EC:7.6.2.11]
NBZ79_02415  choline ABC transporter substrate-binding protein [KO:K02002]
NBZ79_02420  choW; choline ABC transporter permease subunit [KO:K02001]
NBZ79_02425  choV; choline ABC transporter ATP-binding protein [KO:K02000] [EC:7.6.2.9]
NBZ79_18005  ABC transporter ATP-binding protein [KO:K10112] [EC:7.5.2.-]
NBZ79_18025  ABC transporter ATP-binding protein [KO:K10112] [EC:7.5.2.-]
NBZ79_08205  ABC transporter substrate-binding protein [KO:K07323]
NBZ79_09955  ABC transporter substrate-binding protein [KO:K07323]
NBZ79_09790  mlaD; outer membrane lipid asymmetry maintenance protein MlaD [KO:K02067]
NBZ79_12510  ABC transporter permease [KO:K02066]
NBZ79_04865  ATP-binding cassette domain-containing protein [KO:K02065]
NBZ79_12515  ATP-binding cassette domain-containing protein [KO:K02065]
NBZ79_04670  BMP family ABC transporter substrate-binding protein [KO:K07335]
NBZ79_05010  BMP family ABC transporter substrate-binding protein [KO:K07335]
NBZ79_17425  BMP family protein [KO:K07335]
NBZ79_04680  ABC transporter permease [KO:K23535]
NBZ79_05000  ABC transporter permease [KO:K23535]
NBZ79_17415  ABC transporter permease [KO:K23535]
NBZ79_04675  ABC transporter permease [KO:K23536]
NBZ79_04995  ABC transporter permease [KO:K23536]
NBZ79_17410  ABC transporter permease [KO:K23536]
NBZ79_04685  ABC transporter ATP-binding protein [KO:K23537]
NBZ79_05005  ABC transporter ATP-binding protein [KO:K23537]
NBZ79_17420  ABC transporter ATP-binding protein [KO:K23537]
NBZ79_19095  sugar ABC transporter substrate-binding protein [KO:K10439]
NBZ79_01195  ABC transporter permease [KO:K10440]
NBZ79_19085  ABC transporter permease [KO:K10440]
NBZ79_19090  ABC transporter permease [KO:K10440]
NBZ79_01190  sugar ABC transporter ATP-binding protein [KO:K10441] [EC:7.5.2.7]
NBZ79_19075  sugar ABC transporter ATP-binding protein [KO:K10441] [EC:7.5.2.7]
NBZ79_05605  ABC transporter substrate-binding protein [KO:K17321]
NBZ79_05620  sugar ABC transporter permease [KO:K17322]
NBZ79_05625  carbohydrate ABC transporter permease [KO:K17323]
NBZ79_05610  ABC transporter ATP-binding protein [KO:K17324]
NBZ79_05615  ABC transporter ATP-binding protein [KO:K17325]
NBZ79_04430  ugpB; sn-glycerol-3-phosphate ABC transporter substrate-binding protein UgpB [KO:K05813]
NBZ79_04435  ugpA; sn-glycerol-3-phosphate ABC transporter permease UgpA [KO:K05814]
NBZ79_04440  ugpE; sn-glycerol-3-phosphate ABC transporter permease UgpE [KO:K05815]
NBZ79_04445  sn-glycerol-3-phosphate import ATP-binding protein UgpC [KO:K05816] [EC:7.6.2.10]
NBZ79_08175  substrate-binding domain-containing protein [KO:K02040]
NBZ79_08180  pstC; phosphate ABC transporter permease subunit PstC [KO:K02037]
NBZ79_08185  pstA; phosphate ABC transporter permease PstA [KO:K02038]
NBZ79_08190  pstB; phosphate ABC transporter ATP-binding protein PstB [KO:K02036] [EC:7.3.2.1]
NBZ79_17235  phnD; phosphate/phosphite/phosphonate ABC transporter substrate-binding protein [KO:K02044]
NBZ79_17220  phnE; phosphonate ABC transporter, permease protein PhnE [KO:K02042]
NBZ79_17225  phnE; phosphonate ABC transporter, permease protein PhnE [KO:K02042]
NBZ79_17230  phnC; phosphonate ABC transporter ATP-binding protein [KO:K02041] [EC:7.3.2.2]
NBZ79_12270  amino acid ABC transporter substrate-binding protein [KO:K09969]
NBZ79_12265  amino acid ABC transporter permease [KO:K09970]
NBZ79_12260  amino acid ABC transporter permease [KO:K09971]
NBZ79_12255  amino acid ABC transporter ATP-binding protein [KO:K09972] [EC:7.4.2.1]
NBZ79_01420  ABC transporter substrate-binding protein [KO:K01999]
NBZ79_01815  branched-chain amino acid ABC transporter substrate-binding protein [KO:K01999]
NBZ79_02580  ABC transporter substrate-binding protein [KO:K01999]
NBZ79_03325  amino acid ABC transporter substrate-binding protein [KO:K01999]
NBZ79_04530  substrate-binding protein [KO:K01999]
NBZ79_05730  ABC transporter substrate-binding protein [KO:K01999]
NBZ79_06615  branched-chain amino acid ABC transporter substrate-binding protein [KO:K01999]
NBZ79_09710  ABC transporter substrate-binding protein [KO:K01999]
NBZ79_10765  ABC transporter substrate-binding protein [KO:K01999]
NBZ79_17070  ABC transporter substrate-binding protein [KO:K01999]
NBZ79_17745  ABC transporter substrate-binding protein [KO:K01999]
NBZ79_01410  branched-chain amino acid ABC transporter permease [KO:K01997]
NBZ79_01790  branched-chain amino acid ABC transporter permease LivH [KO:K01997]
NBZ79_02570  branched-chain amino acid ABC transporter permease [KO:K01997]
NBZ79_03320  branched-chain amino acid ABC transporter permease [KO:K01997]
NBZ79_04535  branched-chain amino acid ABC transporter permease [KO:K01997]
NBZ79_05740  branched-chain amino acid ABC transporter permease [KO:K01997]
NBZ79_06620  branched-chain amino acid ABC transporter permease [KO:K01997]
NBZ79_10770  branched-chain amino acid ABC transporter permease [KO:K01997]
NBZ79_17065  branched-chain amino acid ABC transporter permease [KO:K01997]
NBZ79_17730  branched-chain amino acid ABC transporter permease [KO:K01997]
NBZ79_19475  branched-chain amino acid ABC transporter permease [KO:K01997]
NBZ79_00360  branched-chain amino acid ABC transporter permease [KO:K01998]
NBZ79_01415  branched-chain amino acid ABC transporter permease [KO:K01998]
NBZ79_01795  livM; high-affinity branched-chain amino acid ABC transporter permease LivM [KO:K01998]
NBZ79_02575  branched-chain amino acid ABC transporter permease [KO:K01998]
NBZ79_03315  branched-chain amino acid ABC transporter permease [KO:K01998]
NBZ79_05735  branched-chain amino acid ABC transporter permease [KO:K01998]
NBZ79_06625  branched-chain amino acid ABC transporter permease [KO:K01998]
NBZ79_10775  branched-chain amino acid ABC transporter permease [KO:K01998]
NBZ79_17060  branched-chain amino acid ABC transporter permease [KO:K01998]
NBZ79_17725  branched-chain amino acid ABC transporter permease [KO:K01998]
NBZ79_01405  ABC transporter ATP-binding protein [KO:K01995]
NBZ79_01800  ABC transporter ATP-binding protein [KO:K01995]
NBZ79_02560  ABC transporter ATP-binding protein [KO:K01995]
NBZ79_03310  ABC transporter ATP-binding protein [KO:K01995]
NBZ79_04545  ABC transporter ATP-binding protein [KO:K01995]
NBZ79_05750  ABC transporter ATP-binding protein [KO:K01995]
NBZ79_06630  ABC transporter ATP-binding protein [KO:K01995]
NBZ79_10780  ABC transporter ATP-binding protein [KO:K01995]
NBZ79_17055  ABC transporter ATP-binding protein [KO:K01995]
NBZ79_17740  ATP-binding cassette domain-containing protein [KO:K01995]
NBZ79_01425  ABC transporter ATP-binding protein [KO:K01996]
NBZ79_01805  ABC transporter ATP-binding protein [KO:K01996]
NBZ79_02565  ABC transporter ATP-binding protein [KO:K01996]
NBZ79_03305  ABC transporter ATP-binding protein [KO:K01996]
NBZ79_04550  ABC transporter ATP-binding protein [KO:K01996]
NBZ79_05755  ABC transporter ATP-binding protein [KO:K01996]
NBZ79_06635  ABC transporter ATP-binding protein [KO:K01996]
NBZ79_10785  ABC transporter ATP-binding protein [KO:K01996]
NBZ79_17050  ABC transporter ATP-binding protein [KO:K01996]
NBZ79_17735  ABC transporter ATP-binding protein [KO:K01996]
NBZ79_06000  transporter substrate-binding protein [KO:K11959]
NBZ79_06085  substrate-binding domain-containing protein [KO:K11959]
NBZ79_06005  hypothetical protein [KO:K11960]
NBZ79_06010  hypothetical protein [KO:K11961]
NBZ79_06015  ATP-binding cassette domain-containing protein [KO:K11962]
NBZ79_06020  ABC transporter ATP-binding protein [KO:K11963]
NBZ79_07495  ABC transporter substrate-binding protein [KO:K12368]
NBZ79_07490  ABC transporter permease subunit [KO:K12369]
NBZ79_07485  ABC transporter permease subunit [KO:K12370]
NBZ79_07480  ABC transporter ATP-binding protein [KO:K12371]
NBZ79_07475  dipeptide ABC transporter ATP-binding protein [KO:K12372]
NBZ79_01945  extracellular solute-binding protein [KO:K13893]
NBZ79_01950  extracellular solute-binding protein [KO:K13893]
NBZ79_01940  microcin C ABC transporter permease YejB [KO:K13894]
NBZ79_01935  ABC transporter permease [KO:K13895]
NBZ79_01930  ABC transporter ATP-binding protein [KO:K13896]
NBZ79_00680  zinc ABC transporter substrate-binding protein [KO:K09815]
NBZ79_08990  zinc ABC transporter substrate-binding protein [KO:K09815]
NBZ79_00695  metal ABC transporter permease [KO:K09816]
NBZ79_00690  metal ABC transporter ATP-binding protein [KO:K09817] [EC:7.2.2.20]
NBZ79_13175  biotin transporter BioY [KO:K03523]
NBZ79_07410  hypothetical protein [KO:K10107]
NBZ79_07400  ABC transporter permease [KO:K09688]
NBZ79_07405  ABC transporter ATP-binding protein [KO:K09689] [EC:7.6.2.12]
NBZ79_18680  ABC transporter permease [KO:K09694]
NBZ79_18675  ATP-binding cassette domain-containing protein [KO:K09695]
NBZ79_10530  lipoprotein-releasing ABC transporter permease subunit [KO:K09808]
NBZ79_10525  ABC transporter ATP-binding protein [KO:K09810] [EC:7.6.2.-]
NBZ79_01445  heme ABC transporter permease [KO:K02195]
NBZ79_01440  ccmB; heme exporter protein CcmB [KO:K02194]
NBZ79_01435  ccmA; heme ABC exporter ATP-binding protein CcmA [KO:K02193] [EC:7.6.2.5]
NBZ79_12410  LptF/LptG family permease [KO:K07091]
NBZ79_12415  lptG; LPS export ABC transporter permease LptG [KO:K11720]
NBZ79_00935  lptB; LPS export ABC transporter ATP-binding protein [KO:K06861] [EC:7.5.2.5]
NBZ79_18085  hypothetical protein [KO:K09811]
NBZ79_18080  ftsE; cell division ATP-binding protein FtsE [KO:K09812]
NBZ79_16900  ABC transporter transmembrane domain-containing protein [KO:K11085] [EC:7.5.2.6]
NBZ79_11170  type I secretion system permease/ATPase [KO:K11004]
NBZ79_11090  ABC transporter ATP-binding protein/permease [KO:K24821]
NBZ79_04760  peptidase domain-containing ABC transporter [KO:K12541]
NBZ79_04765  peptidase domain-containing ABC transporter [KO:K12541]
NBZ79_04915  type I secretion system permease/ATPase [KO:K12541]
NBZ79_03410  type I secretion system permease/ATPase [KO:K12536]
NBZ79_19250  type I secretion system permease/ATPase [KO:K12536]
Compound
C00009  Orthophosphate
C00025  L-Glutamate
C00031  D-Glucose
C00032  Heme
C00034  Manganese
C00037  Glycine
C00038  Zinc cation
C00041  L-Alanine
C00047  L-Lysine
C00049  L-Aspartate
C00051  Glutathione
C00059  Sulfate
C00062  L-Arginine
C00064  L-Glutamine
C00065  L-Serine
C00070  Copper
C00077  L-Ornithine
C00079  L-Phenylalanine
C00086  Urea
C00088  Nitrite
C00089  Sucrose
C00093  sn-Glycerol 3-phosphate
C00095  D-Fructose
C00098  Oligopeptide
C00107  Dipeptide
C00114  Choline
C00116  Glycerol
C00120  Biotin
C00121  D-Ribose
C00123  L-Leucine
C00134  Putrescine
C00135  L-Histidine
C00137  myo-Inositol
C00140  N-Acetyl-D-glucosamine
C00148  L-Proline
C00151  L-Amino acid
C00159  D-Mannose
C00175  Cobalt ion
C00181  D-Xylose
C00183  L-Valine
C00185  Cellobiose
C00188  L-Threonine
C00208  Maltose
C00212  Adenosine
C00243  Lactose
C00244  Nitrate
C00245  Taurine
C00255  Riboflavin
C00259  L-Arabinose
C00288  HCO3-
C00291  Nickel
C00294  Inosine
C00299  Uridine
C00315  Spermidine
C00320  Thiosulfate
C00330  Deoxyguanosine
C00333  D-Galacturonate
C00338  Lipopolysaccharide
C00378  Thiamine
C00379  Xylitol
C00387  Guanosine
C00392  Mannitol
C00407  L-Isoleucine
C00430  5-Aminolevulinate
C00470  Pectate
C00475  Cytidine
C00487  Carnitine
C00491  L-Cystine
C00492  Raffinose
C00503  Erythritol
C00526  Deoxyuridine
C00559  Deoxyadenosine
C00719  Betaine
C00794  D-Sorbitol
C00855  D-Methionine
C00865  Phospholipid
C00881  Deoxycytidine
C00919  Choline sulfate
C00973  Cyclomaltodextrin
C01083  alpha,alpha-Trehalose
C01153  Orthophosphoric monoester
C01157  Hydroxyproline
C01177  Inositol 1-phosphate
C01181  4-Trimethylammoniobutanoate
C01279  4-Amino-5-hydroxymethyl-2-methylpyrimidine
C01330  Sodium cation
C01417  Cyanate
C01487  D-Allose
C01606  Phthalate
C01630  Xylobiose
C01667  Bacitracin
C01674  Chitobiose
C01682  Nopaline
C01684  D-Rhamnose
C01762  Xanthosine
C01834  Lipoprotein
C01835  Maltotriose
C01935  Maltodextrin
C01946  Oleandomycin
C02160  Isomaltotriose
C02273  Digalacturonate
C03557  2-Aminoethylphosphonate
C03611  Galactose oligosaccharide
C03619  Methyl beta-D-galactoside
C04114  (E)-4-(Trimethylammonio)but-2-enoate
C04137  Octopine
C05349  Ciprofloxacin
C05402  Melibiose
C05512  Deoxyinosine
C05776  Vitamin B12
C06227  Fe(III)hydroxamate
C06229  Fe(III)dicitrate
C06230  Fe-enterobactin
C06232  Molybdate
C06687  Norfloxacin
C06705  Capsular polysaccharide
C06706  Lipo-oligosaccharide
C06707  Teichoic acid
C06767  Hemine
C07662  Sparfloxacin
C07663  Moxifloxacin
C11612  Polymyxin B
C13768  Colistin sulfate
C14818  Fe2+
C14819  Fe3+
C15521  Alkanesulfonate
C15719  Coelichelin
C16421  AI-2
C16692  Mannopine
C19609  Nickel(2+)
C19872  N-Formyl-4-amino-5-aminomethyl-2-methylpyrimidine
C20570  alpha-1,5-L-Arabinobiose
C20571  alpha-1,5-L-Arabinotriose
C20572  alpha-1,5-L-Arabinotetraose
C20573  Aldotetraouronic acid
C20679  Tungstate
C21066  D-Galactofuranose
C22040  S-Methyl-L-cysteine
G00457  Maltotetraose
Reference
PMID:9799792
  Authors
Tomii K, Kanehisa M.
  Title
A comparative analysis of ABC transporters in complete microbial genomes.
  Journal
Genome Res 8:1048-59 (1998)
DOI:10.1101/gr.8.10.1048
Reference
  Authors
Sperandeo P, Lau FK, Carpentieri A, De Castro C, Molinaro A, Deho G, Silhavy TJ, Polissi A
  Title
Functional analysis of the protein machinery required for transport of lipopolysaccharide to the outer membrane of Escherichia coli.
  Journal
J Bacteriol 190:4460-9 (2008)
DOI:10.1128/JB.00270-08
Reference
  Authors
Ruiz N, Gronenberg LS, Kahne D, Silhavy TJ
  Title
Identification of two inner-membrane proteins required for the transport of lipopolysaccharide to the outer membrane of Escherichia coli.
  Journal
Proc Natl Acad Sci U S A 105:5537-42 (2008)
DOI:10.1073/pnas.0801196105
Reference
  Authors
Omata T, Price GD, Badger MR, Okamura M, Gohta S, Ogawa T
  Title
Identification of an ATP-binding cassette transporter involved in bicarbonate uptake in the cyanobacterium Synechococcus sp. strain PCC 7942.
  Journal
Proc Natl Acad Sci U S A 96:13571-6 (1999)
DOI:10.1073/pnas.96.23.13571
Reference
  Authors
Quintero MJ, Montesinos ML, Herrero A, Flores E
  Title
Identification of genes encoding amino acid permeases by inactivation of selected ORFs from the Synechocystis genomic sequence.
  Journal
Genome Res 11:2034-40 (2001)
DOI:10.1101/gr.196301
Reference
  Authors
Picossi S, Montesinos ML, Pernil R, Lichtle C, Herrero A, Flores E
  Title
ABC-type neutral amino acid permease N-I is required for optimal diazotrophic growth and is repressed in the heterocysts of Anabaena sp. strain PCC 7120.
  Journal
Mol Microbiol 57:1582-92 (2005)
DOI:10.1111/j.1365-2958.2005.04791.x
Reference
  Authors
Valladares A, Montesinos ML, Herrero A, Flores E.
  Title
An ABC-type, high-affinity urea permease identified in cyanobacteria.
  Journal
Mol Microbiol 43:703-15 (2002)
DOI:10.1046/j.1365-2958.2002.02778.x
Reference
  Authors
Richard-Fogal CL, Frawley ER, Kranz RG
  Title
Topology and function of CcmD in cytochrome c maturation.
  Journal
J Bacteriol 190:3489-93 (2008)
DOI:10.1128/JB.00146-08
Reference
  Authors
Suzuki H, Koyanagi T, Izuka S, Onishi A, Kumagai H
  Title
The yliA, -B, -C, and -D genes of Escherichia coli K-12 encode a novel glutathione importer with an ATP-binding cassette.
  Journal
J Bacteriol 187:5861-7 (2005)
DOI:10.1128/JB.187.17.5861-5867.2005
Reference
  Authors
Novikova M, Metlitskaya A, Datsenko K, Kazakov T, Kazakov A, Wanner B, Severinov K
  Title
The Escherichia coli Yej transporter is required for the uptake of translation inhibitor microcin C.
  Journal
J Bacteriol 189:8361-5 (2007)
DOI:10.1128/JB.01028-07
Reference
  Authors
Tikhonova EB, Devroy VK, Lau SY, Zgurskaya HI
  Title
Reconstitution of the Escherichia coli macrolide transporter: the periplasmic membrane fusion protein MacA stimulates the ATPase activity of MacB.
  Journal
Mol Microbiol 63:895-910 (2007)
DOI:10.1111/j.1365-2958.2006.05549.x
Reference
  Authors
Yamanaka H, Kobayashi H, Takahashi E, Okamoto K
  Title
MacAB is involved in the secretion of Escherichia coli heat-stable enterotoxin II.
  Journal
J Bacteriol 190:7693-8 (2008)
DOI:10.1128/JB.00853-08
KO pathway
ko02010   
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