KEGG   PATHWAY: sol00020
Entry
sol00020                    Pathway                                
Name
Citrate cycle (TCA cycle) - Saccharolobus solfataricus 98/2
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
sol00020  Citrate cycle (TCA cycle)
sol00020

Module
sol_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:sol00020]
sol_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:sol00020]
sol_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:sol00020]
sol_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:sol00020]
sol_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:sol00020]
Other DBs
GO: 0006099
Organism
Saccharolobus solfataricus 98/2 [GN:sol]
Gene
Ssol_0398  2-methylcitrate synthase/citrate synthase II [KO:K01647] [EC:2.3.3.1]
Ssol_2068  aconitate hydratase 1 [KO:K01681] [EC:4.2.1.3]
Ssol_0001  isocitrate dehydrogenase, NADP-dependent [KO:K00031] [EC:1.1.1.42]
Ssol_2095  FAD-dependent pyridine nucleotide-disulphide oxidoreductase [KO:K00382] [EC:1.8.1.4]
Ssol_0370  FAD-dependent pyridine nucleotide-disulphide oxidoreductase [KO:K00382] [EC:1.8.1.4]
Ssol_2362  FAD-dependent pyridine nucleotide-disulphide oxidoreductase [KO:K00382] [EC:1.8.1.4]
Ssol_2394  FAD-dependent pyridine nucleotide-disulphide oxidoreductase [KO:K00382] [EC:1.8.1.4]
Ssol_0633  pyruvate flavodoxin/ferredoxin oxidoreductase domain protein [KO:K00174] [EC:1.2.7.3 1.2.7.11]
Ssol_0634  pyruvate ferredoxin/flavodoxin oxidoreductase, beta subunit [KO:K00175] [EC:1.2.7.3 1.2.7.11]
Ssol_0294  Succinate--CoA ligase (ADP-forming) [KO:K01902] [EC:6.2.1.5]
Ssol_0293  Succinate--CoA ligase (ADP-forming) [KO:K01903] [EC:6.2.1.5]
Ssol_0170  succinate dehydrogenase or fumarate reductase, flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
Ssol_0171  succinate dehydrogenase and fumarate reductase iron-sulfur protein [KO:K00240] [EC:1.3.5.1]
Ssol_0172  CoB--CoM heterodisulfide reductase [KO:K00241]
Ssol_0173  succinate dehydrogenase subunit D (SdhD) [KO:K18859]
Ssol_2053  fumarate lyase [KO:K01679] [EC:4.2.1.2]
Ssol_0394  Lactate/malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
Ssol_0343  Phosphoenolpyruvate carboxykinase (GTP) [KO:K01596] [EC:4.1.1.32]
Ssol_2366  catalytic domain of components of various dehydrogenase complexes [KO:K00627] [EC:2.3.1.12]
Ssol_2858  pyruvate flavodoxin/ferredoxin oxidoreductase domain protein [KO:K00169] [EC:1.2.7.1]
Ssol_0569  pyruvate flavodoxin/ferredoxin oxidoreductase domain protein [KO:K00169] [EC:1.2.7.1]
Ssol_2170  thiamine pyrophosphate protein domain protein TPP-binding protein [KO:K00170] [EC:1.2.7.1]
Ssol_0568  thiamine pyrophosphate protein domain protein TPP-binding protein [KO:K00170] [EC:1.2.7.1]
Ssol_2859  thiamine pyrophosphate protein domain protein TPP-binding protein [KO:K00170] [EC:1.2.7.1]
Ssol_2173  pyruvate/ketoisovalerate oxidoreductase, gamma subunit [KO:K00172] [EC:1.2.7.1]
Ssol_0571  pyruvate/ketoisovalerate oxidoreductase, gamma subunit [KO:K00172] [EC:1.2.7.1]
Ssol_0570  pyruvate ferredoxin/flavodoxin oxidoreductase, delta subunit [KO:K00171] [EC:1.2.7.1]
Ssol_2857  pyruvate ferredoxin/flavodoxin oxidoreductase, delta subunit [KO:K00171] [EC:1.2.7.1]
Ssol_2172  pyruvate ferredoxin/flavodoxin oxidoreductase, delta subunit [KO:K00171] [EC:1.2.7.1]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
sol00010  Glycolysis / Gluconeogenesis
sol00053  Ascorbate and aldarate metabolism
sol00061  Fatty acid biosynthesis
sol00071  Fatty acid degradation
sol00190  Oxidative phosphorylation
sol00220  Arginine biosynthesis
sol00250  Alanine, aspartate and glutamate metabolism
sol00280  Valine, leucine and isoleucine degradation
sol00350  Tyrosine metabolism
sol00470  D-Amino acid metabolism
sol00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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