KEGG   PATHWAY: spoa00020
Entry
spoa00020                   Pathway                                
Name
Citrate cycle (TCA cycle) - Acidilutibacter cellobiosedens
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
spoa00020  Citrate cycle (TCA cycle)
spoa00020

Module
spoa_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:spoa00020]
spoa_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:spoa00020]
spoa_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:spoa00020]
Other DBs
GO: 0006099
Organism
Acidilutibacter cellobiosedens [GN:spoa]
Gene
EQM13_05545  2-isopropylmalate synthase [KO:K05942] [EC:2.3.3.3]
EQM13_05550  aconitate hydratase [KO:K01681] [EC:4.2.1.3]
EQM13_05555  isocitrate/isopropylmalate dehydrogenase family protein [KO:K00030] [EC:1.1.1.41]
EQM13_01765  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
EQM13_14650  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
EQM13_02510  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
EQM13_13930  vorB; 3-methyl-2-oxobutanoate dehydrogenase subunit VorB [KO:K00174] [EC:1.2.7.3 1.2.7.11]
EQM13_09045  2-oxoacid:acceptor oxidoreductase subunit alpha [KO:K00174] [EC:1.2.7.3 1.2.7.11]
EQM13_13925  2-oxoglutarate oxidoreductase [KO:K00175] [EC:1.2.7.3 1.2.7.11]
EQM13_09040  2-oxoacid:ferredoxin oxidoreductase subunit beta [KO:K00175] [EC:1.2.7.3 1.2.7.11]
EQM13_13920  2-oxoacid:ferredoxin oxidoreductase subunit gamma [KO:K00177] [EC:1.2.7.3]
EQM13_09035  2-oxoacid:ferredoxin oxidoreductase subunit gamma [KO:K00177] [EC:1.2.7.3]
EQM13_13935  4Fe-4S dicluster domain-containing protein [KO:K00176] [EC:1.2.7.3]
EQM13_09050  4Fe-4S dicluster domain-containing protein [KO:K00176] [EC:1.2.7.3]
EQM13_15040  succinate CoA transferase [KO:K18118] [EC:2.8.3.18]
EQM13_03675  fumarate hydratase [KO:K01677] [EC:4.2.1.2]
EQM13_03680  Fe-S-containing hydro-lyase [KO:K01678] [EC:4.2.1.2]
EQM13_05560  pyruvate carboxylase [KO:K01958] [EC:6.4.1.1]
EQM13_03080  phosphoenolpyruvate carboxykinase (GTP) [KO:K01596] [EC:4.1.1.32]
EQM13_01760  2-oxo acid dehydrogenase subunit E2 [KO:K00627] [EC:2.3.1.12]
EQM13_14655  dihydrolipoamide acetyltransferase [KO:K00627] [EC:2.3.1.12]
EQM13_05465  porA; pyruvate ferredoxin oxidoreductase [KO:K00169] [EC:1.2.7.1]
EQM13_05470  pyruvate synthase subunit beta [KO:K00170] [EC:1.2.7.1]
EQM13_05455  pyruvate ferredoxin oxidoreductase [KO:K00172] [EC:1.2.7.1]
EQM13_05460  pyruvate ferredoxin oxidoreductase [KO:K00171] [EC:1.2.7.1]
EQM13_04675  nifJ; pyruvate:ferredoxin (flavodoxin) oxidoreductase [KO:K03737] [EC:1.2.7.1 1.2.7.-]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
spoa00010  Glycolysis / Gluconeogenesis
spoa00053  Ascorbate and aldarate metabolism
spoa00061  Fatty acid biosynthesis
spoa00071  Fatty acid degradation
spoa00190  Oxidative phosphorylation
spoa00220  Arginine biosynthesis
spoa00250  Alanine, aspartate and glutamate metabolism
spoa00280  Valine, leucine and isoleucine degradation
spoa00350  Tyrosine metabolism
spoa00470  D-Amino acid metabolism
spoa00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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