KEGG   PATHWAY: spsy03018
Entry
spsy03018                   Pathway                                
Name
RNA degradation - Sporosarcina psychrophila
Description
The correct processing, quality control and turnover of cellular RNA molecules are critical to many aspects in the expression of genetic information. In eukaryotes, two major pathways of mRNA decay exist and both pathways are initiated by poly(A) shortening of the mRNA. In the 5' to 3' pathway, this is followed by decapping which then permits the 5' to 3' exonucleolytic degradation of transcripts. In the 3' to 5' pathway, the exosome, a large multisubunit complex, plays a key role. The exosome exists in archaeal cells, too. In bacteria, endoribonuclease E, a key enzyme involved in RNA decay and processing, organizes a protein complex called degradosome. RNase E or R interacts with the phosphate-dependent exoribonuclease polynucleotide phosphorylase, DEAD-box helicases, and additional factors in the RNA-degrading complex.
Class
Genetic Information Processing; Folding, sorting and degradation
Pathway map
spsy03018  RNA degradation
spsy03018

Other DBs
GO: 0006401
Organism
Sporosarcina psychrophila [GN:spsy]
Gene
AZE41_04235  eno; phosphopyruvate hydratase [KO:K01689] [EC:4.2.1.11]
AZE41_15295  polyribonucleotide nucleotidyltransferase [KO:K00962] [EC:2.7.7.8]
AZE41_04250  ribonuclease R [KO:K12573] [EC:3.1.13.1]
AZE41_02560  DEAD/DEAH box helicase [KO:K05592] [EC:5.6.2.7]
AZE41_14310  RNA helicase [KO:K05592] [EC:5.6.2.7]
AZE41_06120  RNA helicase [KO:K05592] [EC:5.6.2.7]
AZE41_13635  hypothetical protein [KO:K03654] [EC:5.6.2.4]
AZE41_07945  ATP-dependent DNA helicase RecQ [KO:K03654] [EC:5.6.2.4]
AZE41_19555  transcription termination factor Rho [KO:K03628]
AZE41_15185  ribonuclease Y [KO:K18682] [EC:3.1.-.-]
AZE41_16325  ribonuclease J [KO:K12574] [EC:3.1.-.-]
AZE41_15260  Zn-dependent hydrolase [KO:K12574] [EC:3.1.-.-]
AZE41_14155  ribonuclease J [KO:K12574] [EC:3.1.-.-]
AZE41_07695  ATP-dependent 6-phosphofructokinase [KO:K00850] [EC:2.7.1.11]
AZE41_09160  dnaK; molecular chaperone DnaK [KO:K04043]
AZE41_02760  groEL; molecular chaperone GroEL [KO:K04077] [EC:5.6.1.7]
AZE41_15135  RNA-binding protein Hfq [KO:K03666]
Reference
  Authors
Houseley J, Tollervey D
  Title
The many pathways of RNA degradation.
  Journal
Cell 136:763-76 (2009)
DOI:10.1016/j.cell.2009.01.019
Reference
  Authors
Buttner K, Wenig K, Hopfner KP
  Title
The exosome: a macromolecular cage for controlled RNA degradation.
  Journal
Mol Microbiol 61:1372-9 (2006)
DOI:10.1111/j.1365-2958.2006.05331.x
Reference
  Authors
Schilders G, van Dijk E, Raijmakers R, Pruijn GJ
  Title
Cell and molecular biology of the exosome: how to make or break an RNA.
  Journal
Int Rev Cytol 251:159-208 (2006)
DOI:10.1016/S0074-7696(06)51005-8
Reference
  Authors
Hartung S, Hopfner KP
  Title
The exosome, plugged.
  Journal
EMBO Rep 8:456-7 (2007)
DOI:10.1038/sj.embor.7400961
Reference
  Authors
Carpousis AJ
  Title
The RNA degradosome of Escherichia coli: an mRNA-degrading machine assembled on RNase E.
  Journal
Annu Rev Microbiol 61:71-87 (2007)
DOI:10.1146/annurev.micro.61.080706.093440
Reference
  Authors
Marcaida MJ, DePristo MA, Chandran V, Carpousis AJ, Luisi BF
  Title
The RNA degradosome: life in the fast lane of adaptive molecular evolution.
  Journal
Trends Biochem Sci 31:359-65 (2006)
DOI:10.1016/j.tibs.2006.05.005
Reference
  Authors
Condon C
  Title
Maturation and degradation of RNA in bacteria.
  Journal
Curr Opin Microbiol 10:271-8 (2007)
DOI:10.1016/j.mib.2007.05.008
KO pathway
ko03018   
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