KEGG   PATHWAY: sra00630
Entry
sra00630                    Pathway                                
Name
Glyoxylate and dicarboxylate metabolism - Serratia sp. AS13
Class
Metabolism; Carbohydrate metabolism
Pathway map
sra00630  Glyoxylate and dicarboxylate metabolism
sra00630

Module
sra_M00012  Glyoxylate cycle [PATH:sra00630]
sra_M00621  Glycine cleavage system [PATH:sra00630]
Other DBs
GO: 0046487 0043648
Organism
Serratia sp. AS13 [GN:sra]
Gene
SerAS13_4600  isocitrate lyase [KO:K01637] [EC:4.1.3.1]
SerAS13_0258  Acetyl-coenzyme A synthetase [KO:K01895] [EC:6.2.1.1]
SerAS13_4601  malate synthase A [KO:K01638] [EC:2.3.3.9]
SerAS13_0409  Malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
SerAS13_1234  citrate synthase I [KO:K01647] [EC:2.3.3.1]
SerAS13_2651  aconitate hydratase 1 [KO:K01681] [EC:4.2.1.3]
SerAS13_4212  aconitate hydratase 2 [KO:K01682] [EC:4.2.1.3 4.2.1.99]
SerAS13_2536  Glyoxalase/bleomycin resistance protein/dioxygenase [KO:K05606] [EC:5.1.99.1]
SerAS13_3476  Catalase [KO:K03781] [EC:1.11.1.6]
SerAS13_1882  Glyoxylate/hydroxypyruvate reductase A [KO:K12972] [EC:1.1.1.79 1.1.1.81]
SerAS13_0017  Glyoxylate/hydroxypyruvate reductase B [KO:K00090] [EC:1.1.1.79 1.1.1.81 1.1.1.215]
SerAS13_4693  Phosphoglycolate phosphatase [KO:K01091] [EC:3.1.3.18]
SerAS13_4967  glutamine synthetase, type I [KO:K01915] [EC:6.3.1.2]
SerAS13_3840  Glycine hydroxymethyltransferase [KO:K00600] [EC:2.1.2.1]
SerAS13_4122  Glycine dehydrogenase (decarboxylating) [KO:K00281] [EC:1.4.4.2]
SerAS13_4124  Aminomethyltransferase [KO:K00605] [EC:2.1.2.10]
SerAS13_4213  dihydrolipoamide dehydrogenase [KO:K00382] [EC:1.8.1.4]
SerAS13_3303  dihydrolipoamide dehydrogenase [KO:K00382] [EC:1.8.1.4]
SerAS13_4872  Dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
SerAS13_4123  Glycine cleavage system H protein [KO:K02437]
SerAS13_2368  Xylose isomerase domain-containing protein TIM barrel [KO:K01816] [EC:5.3.1.22]
SerAS13_1070  glycerate kinase [KO:K00865] [EC:2.7.1.165]
SerAS13_4598  2-dehydro-3-deoxyphosphogluconate aldolase/4-hydroxy-2-oxoglutarate aldolase [KO:K01625] [EC:4.1.2.14 4.1.3.42]
SerAS13_2861  2-dehydro-3-deoxyphosphogluconate aldolase/4-hydroxy-2-oxoglutarate aldolase [KO:K01625] [EC:4.1.2.14 4.1.3.42]
SerAS13_0042  formate dehydrogenase, alpha subunit [KO:K00123] [EC:1.17.1.9]
SerAS13_0043  formate dehydrogenase, beta subunit [KO:K00124]
SerAS13_0044  formate dehydrogenase, gamma subunit [KO:K00127]
SerAS13_3166  Arylformamidase [KO:K01432] [EC:3.5.1.9]
SerAS13_2746  formyltetrahydrofolate deformylase [KO:K01433] [EC:3.5.1.10]
SerAS13_2016  N-formylglutamate amidohydrolase [KO:K01458] [EC:3.5.1.68]
Compound
C00007  Oxygen
C00011  CO2
C00014  Ammonia
C00022  Pyruvate
C00024  Acetyl-CoA
C00025  L-Glutamate
C00026  2-Oxoglutarate
C00027  Hydrogen peroxide
C00033  Acetate
C00036  Oxaloacetate
C00037  Glycine
C00042  Succinate
C00048  Glyoxylate
C00058  Formate
C00064  L-Glutamine
C00065  L-Serine
C00091  Succinyl-CoA
C00100  Propanoyl-CoA
C00111  Glycerone phosphate
C00136  Butanoyl-CoA
C00149  (S)-Malate
C00158  Citrate
C00160  Glycolate
C00168  Hydroxypyruvate
C00197  3-Phospho-D-glycerate
C00209  Oxalate
C00258  D-Glycerate
C00266  Glycolaldehyde
C00311  Isocitrate
C00313  Oxalyl-CoA
C00332  Acetoacetyl-CoA
C00417  cis-Aconitate
C00552  meso-Tartaric acid
C00631  2-Phospho-D-glycerate
C00683  (S)-Methylmalonyl-CoA
C00798  Formyl-CoA
C00877  Crotonoyl-CoA
C00888  Pentanoyl-CoA
C00898  (R,R)-Tartaric acid
C00975  Dihydroxyfumarate
C00988  2-Phosphoglycolate
C01127  4-Hydroxy-2-oxoglutarate
C01146  2-Hydroxy-3-oxopropanoate
C01182  D-Ribulose 1,5-bisphosphate
C01213  (R)-Methylmalonyl-CoA
C01380  Ethylene glycol
C01732  Mesaconate
C01989  3-Ethylmalate
C01990  3-Oxalomalate
C02123  3-Propylmalate
C02405  Formyl phosphate
C03217  2-Hydroxy-3-oxoadipate
C03459  2-Hydroxy-3-oxosuccinate
C03548  trans-2,3-Epoxysuccinate
C03561  (R)-3-Hydroxybutanoyl-CoA
C03618  L-threo-3-Methylaspartate
C04348  L-Malyl-CoA
C06027  L-erythro-3-Methylmalyl-CoA
C06028  2-Methylfumaryl-CoA
C06049  N-Formylderivatives
C18026  (2S)-Ethylmalonyl-CoA
C18324  (2S)-Methylsuccinyl-CoA
C20238  (2R)-Ethylmalonyl-CoA
C22337  D-Ribulose 1-phosphate
Reference
  Authors
Njau RK, Herndon CA, Hawes JW.
  Title
Novel beta-hydroxyacid dehydrogenases in Escherichia coli and Haemophilus influenzae.
  Journal
J Biol Chem 275:38780-6 (2000)
DOI:10.1074/jbc.M007432200
Reference
  Authors
Zarzycki J, Schlichting A, Strychalsky N, Muller M, Alber BE, Fuchs G
  Title
Mesaconyl-coenzyme A hydratase, a new enzyme of two central carbon metabolic pathways in bacteria.
  Journal
J Bacteriol 190:1366-74 (2008)
DOI:10.1128/JB.01621-07
Reference
  Authors
Erb TJ, Retey J, Fuchs G, Alber BE
  Title
Ethylmalonyl-CoA mutase from Rhodobacter sphaeroides defines a new subclade of coenzyme B12-dependent acyl-CoA mutases.
  Journal
J Biol Chem 283:32283-93 (2008)
DOI:10.1074/jbc.M805527200
Reference
PMID:9596633
  Authors
Coschigano KT, Melo-Oliveira R, Lim J, Coruzzi GM
  Title
Arabidopsis gls mutants and distinct Fd-GOGAT genes. Implications for photorespiration and primary nitrogen assimilation.
  Journal
Plant Cell 10:741-52 (1998)
DOI:10.1105/tpc.10.5.741
Reference
  Authors
Masclaux-Daubresse C, Reisdorf-Cren M, Pageau K, Lelandais M, Grandjean O, Kronenberger J, Valadier MH, Feraud M, Jouglet T, Suzuki A
  Title
Glutamine synthetase-glutamate synthase pathway and glutamate dehydrogenase play distinct roles in the sink-source nitrogen cycle in tobacco.
  Journal
Plant Physiol 140:444-56 (2006)
DOI:10.1104/pp.105.071910
Reference
  Authors
Khomyakova M, Bukmez O, Thomas LK, Erb TJ, Berg IA
  Title
A methylaspartate cycle in haloarchaea.
  Journal
Science 331:334-7 (2011)
DOI:10.1126/science.1196544
Reference
  Authors
Serrano JA, Bonete MJ
  Title
Sequencing, phylogenetic and transcriptional analysis of the glyoxylate bypass operon (ace) in the halophilic archaeon Haloferax volcanii.
  Journal
Biochim Biophys Acta 1520:154-62 (2001)
DOI:10.1016/S0167-4781(01)00263-9
Related
pathway
sra00010  Glycolysis / Gluconeogenesis
sra00020  Citrate cycle (TCA cycle)
sra00030  Pentose phosphate pathway
sra00053  Ascorbate and aldarate metabolism
sra00071  Fatty acid degradation
sra00230  Purine metabolism
sra00250  Alanine, aspartate and glutamate metabolism
sra00260  Glycine, serine and threonine metabolism
sra00620  Pyruvate metabolism
sra00710  Carbon fixation by Calvin cycle
sra00750  Vitamin B6 metabolism
sra00910  Nitrogen metabolism
KO pathway
ko00630   
LinkDB

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