KEGG   PATHWAY: srub00020
Entry
srub00020                   Pathway                                
Name
Citrate cycle (TCA cycle) - Salinigranum rubrum
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
srub00020  Citrate cycle (TCA cycle)
srub00020

Module
srub_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:srub00020]
srub_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:srub00020]
Other DBs
GO: 0006099
Organism
Salinigranum rubrum [GN:srub]
Gene
C2R22_01460  citrate synthase [KO:K01647] [EC:2.3.3.1]
C2R22_14915  citrate/2-methylcitrate synthase [KO:K01647] [EC:2.3.3.1]
C2R22_14920  citrate synthase/methylcitrate synthase [KO:K01647] [EC:2.3.3.1]
C2R22_18105  aconitate hydratase [KO:K01681] [EC:4.2.1.3]
C2R22_22905  acnA; aconitate hydratase AcnA [KO:K01681] [EC:4.2.1.3]
C2R22_23350  acnA; aconitate hydratase AcnA [KO:K01681] [EC:4.2.1.3]
C2R22_15985  isocitrate dehydrogenase (NADP(+)) [KO:K00031] [EC:1.1.1.42]
C2R22_20330  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
C2R22_05470  2-oxoacid:acceptor oxidoreductase subunit alpha [KO:K00174] [EC:1.2.7.3 1.2.7.11]
C2R22_12815  succinate--CoA ligase subunit alpha [KO:K01902] [EC:6.2.1.5]
C2R22_12810  ADP-forming succinate--CoA ligase subunit beta [KO:K01903] [EC:6.2.1.5]
C2R22_10085  acetyl-CoA hydrolase [KO:K18118] [EC:2.8.3.18]
C2R22_11620  succinate dehydrogenase [KO:K00239] [EC:1.3.5.1]
C2R22_11625  succinate dehydrogenase [KO:K00240] [EC:1.3.5.1]
C2R22_11635  sdhC; succinate dehydrogenase, cytochrome b556 subunit [KO:K00241]
C2R22_11630  succinate dehydrogenase [KO:K00242]
C2R22_11145  aspA; aspartate ammonia-lyase [KO:K01679] [EC:4.2.1.2]
C2R22_20215  malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
C2R22_05280  pdhA; pyruvate dehydrogenase (acetyl-transferring) E1 component subunit alpha [KO:K00161] [EC:1.2.4.1]
C2R22_14355  2-oxo-3-methylvalerate dehydrogenase E1 component subunit alpha [KO:K00161] [EC:1.2.4.1]
C2R22_18475  pdhA; pyruvate dehydrogenase (acetyl-transferring) E1 component subunit alpha [KO:K00161] [EC:1.2.4.1]
C2R22_20400  pdhA; pyruvate dehydrogenase (acetyl-transferring) E1 component subunit alpha [KO:K00161] [EC:1.2.4.1]
C2R22_14350  alpha-ketoacid dehydrogenase subunit beta [KO:K00162] [EC:1.2.4.1]
C2R22_20405  alpha-ketoacid dehydrogenase subunit beta [KO:K00162] [EC:1.2.4.1]
C2R22_18470  alpha-ketoacid dehydrogenase subunit beta [KO:K00162] [EC:1.2.4.1]
C2R22_20410  branched-chain alpha-keto acid dehydrogenase subunit E2 [KO:K00627] [EC:2.3.1.12]
C2R22_08315  2-oxoacid:acceptor oxidoreductase subunit alpha [KO:K00169] [EC:1.2.7.1]
C2R22_08310  2-ketoglutarate ferredoxin oxidoreductase subunit beta [KO:K00170] [EC:1.2.7.1]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
srub00010  Glycolysis / Gluconeogenesis
srub00053  Ascorbate and aldarate metabolism
srub00061  Fatty acid biosynthesis
srub00071  Fatty acid degradation
srub00190  Oxidative phosphorylation
srub00220  Arginine biosynthesis
srub00250  Alanine, aspartate and glutamate metabolism
srub00280  Valine, leucine and isoleucine degradation
srub00350  Tyrosine metabolism
srub00470  D-Amino acid metabolism
srub00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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