KEGG   PATHWAY: ssei00020
Entry
ssei00020                   Pathway                                
Name
Citrate cycle (TCA cycle) - Sulfurimonas sediminis
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
ssei00020  Citrate cycle (TCA cycle)
ssei00020

Module
ssei_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:ssei00020]
ssei_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:ssei00020]
ssei_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:ssei00020]
Other DBs
GO: 0006099
Organism
Sulfurimonas sediminis [GN:ssei]
Gene
FJR45_08955  ATP citrate synthase [KO:K15230] [EC:2.3.3.8]
FJR45_08960  ATPase [KO:K15231] [EC:2.3.3.8]
FJR45_06535  acnB; bifunctional aconitate hydratase 2/2-methylisocitrate dehydratase [KO:K01682] [EC:4.2.1.3 4.2.1.99]
FJR45_00585  NADP-dependent isocitrate dehydrogenase [KO:K00031] [EC:1.1.1.42]
FJR45_06505  NADP-dependent isocitrate dehydrogenase [KO:K00031] [EC:1.1.1.42]
FJR45_02740  NAD(P)/FAD-dependent oxidoreductase [KO:K00382] [EC:1.8.1.4]
FJR45_06475  2-oxoglutarate synthase subunit alpha [KO:K00174] [EC:1.2.7.3 1.2.7.11]
FJR45_06470  2-oxoglutarate ferredoxin oxidoreductase subunit beta [KO:K00175] [EC:1.2.7.3 1.2.7.11]
FJR45_06465  oorC; 2-oxoglutarate:acceptor oxidoreductase [KO:K00177] [EC:1.2.7.3]
FJR45_06480  4Fe-4S dicluster domain-containing protein [KO:K00176] [EC:1.2.7.3]
FJR45_06485  sucD; succinate--CoA ligase subunit alpha [KO:K01902] [EC:6.2.1.5]
FJR45_06490  sucC; ADP-forming succinate--CoA ligase subunit beta [KO:K01903] [EC:6.2.1.5]
FJR45_05800  sdhA; succinate dehydrogenase flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
FJR45_05795  succinate dehydrogenase/fumarate reductase iron-sulfur subunit [KO:K00240] [EC:1.3.5.1]
FJR45_05790  heterodisulfide reductase subunit B [KO:K00241]
FJR45_06495  fumC; class II fumarate hydratase [KO:K01679] [EC:4.2.1.2]
FJR45_06500  mdh; malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
FJR45_09760  acetyl-CoA carboxylase biotin carboxylase subunit [KO:K01959] [EC:6.4.1.1]
FJR45_04885  biotin attachment protein [KO:K01960] [EC:6.4.1.1]
FJR45_02995  pckA; phosphoenolpyruvate carboxykinase (ATP) [KO:K01610] [EC:4.1.1.49]
FJR45_02725  pyruvate dehydrogenase [KO:K00161] [EC:1.2.4.1]
FJR45_02730  alpha-ketoacid dehydrogenase subunit beta [KO:K00162] [EC:1.2.4.1]
FJR45_02735  2-oxo acid dehydrogenase subunit E2 [KO:K00627] [EC:2.3.1.12]
FJR45_02455  ferredoxin oxidoreductase [KO:K00169] [EC:1.2.7.1]
FJR45_02480  ferredoxin oxidoreductase [KO:K00169] [EC:1.2.7.1]
FJR45_10930  2-oxoacid:ferredoxin oxidoreductase subunit alpha [KO:K00169] [EC:1.2.7.1]
FJR45_02450  ferredoxin oxidoreductase [KO:K00170] [EC:1.2.7.1]
FJR45_02475  ferredoxin oxidoreductase [KO:K00170] [EC:1.2.7.1]
FJR45_10925  pyruvate ferredoxin oxidoreductase [KO:K00170] [EC:1.2.7.1]
FJR45_02445  ferredoxin oxidoreductase [KO:K00172] [EC:1.2.7.1]
FJR45_02470  ferredoxin oxidoreductase [KO:K00172] [EC:1.2.7.1]
FJR45_10940  pyruvate flavodoxin oxidoreductase subunit gamma [KO:K00172] [EC:1.2.7.1]
FJR45_02440  ferredoxin oxidoreductase [KO:K00171] [EC:1.2.7.1]
FJR45_02490  ferredoxin oxidoreductase [KO:K00171] [EC:1.2.7.1]
FJR45_10935  4Fe-4S dicluster domain-containing protein [KO:K00171] [EC:1.2.7.1]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
ssei00010  Glycolysis / Gluconeogenesis
ssei00061  Fatty acid biosynthesis
ssei00071  Fatty acid degradation
ssei00190  Oxidative phosphorylation
ssei00220  Arginine biosynthesis
ssei00250  Alanine, aspartate and glutamate metabolism
ssei00280  Valine, leucine and isoleucine degradation
ssei00350  Tyrosine metabolism
ssei00470  D-Amino acid metabolism
ssei00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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