KEGG   PATHWAY: ssoa00020
Entry
ssoa00020                   Pathway                                
Name
Citrate cycle (TCA cycle) - Saccharolobus solfataricus SULA
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
ssoa00020  Citrate cycle (TCA cycle)
ssoa00020

Module
ssoa_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:ssoa00020]
ssoa_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:ssoa00020]
ssoa_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:ssoa00020]
ssoa_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:ssoa00020]
ssoa_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:ssoa00020]
Other DBs
GO: 0006099
Organism
Saccharolobus solfataricus SULA [GN:ssoa]
Gene
SULA_0393  citrate synthase [KO:K01647] [EC:2.3.3.1]
SULA_2100  acnA; aconitate hydratase AcnA [KO:K01681] [EC:4.2.1.3]
SULA_0001  NADP-dependent isocitrate dehydrogenase [KO:K00031] [EC:1.1.1.42]
SULA_2389  NAD(P)/FAD-dependent oxidoreductase [KO:K00382] [EC:1.8.1.4]
SULA_2420  dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
SULA_0364  NAD(P)/FAD-dependent oxidoreductase [KO:K00382] [EC:1.8.1.4]
SULA_2126  NAD(P)/FAD-dependent oxidoreductase [KO:K00382] [EC:1.8.1.4]
SULA_0623  2-oxoacid:acceptor oxidoreductase subunit alpha [KO:K00174] [EC:1.2.7.3 1.2.7.11]
SULA_0624  2-oxoacid:ferredoxin oxidoreductase subunit beta [KO:K00175] [EC:1.2.7.3 1.2.7.11]
SULA_0285  sucD; succinate--CoA ligase subunit alpha [KO:K01902] [EC:6.2.1.5]
SULA_0284  succinate--CoA ligase subunit beta [KO:K01903] [EC:6.2.1.5]
SULA_0162  succinate dehydrogenase flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
SULA_0163  succinate dehydrogenase/fumarate reductase iron-sulfur subunit [KO:K00240] [EC:1.3.5.1]
SULA_0164  disulfide reductase [KO:K00241]
SULA_0165  succinate dehydrogenase [KO:K18859]
SULA_2085  fumarate hydratase [KO:K01679] [EC:4.2.1.2]
SULA_0389  malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
SULA_0335  phosphoenolpyruvate carboxykinase (GTP) [KO:K01596] [EC:4.1.1.32]
SULA_2393  2-oxo acid dehydrogenase subunit E2 [KO:K00627] [EC:2.3.1.12]
SULA_2870  pyruvate ferredoxin oxidoreductase [KO:K00169] [EC:1.2.7.1]
SULA_0559  pyruvate ferredoxin oxidoreductase [KO:K00169] [EC:1.2.7.1]
SULA_0558  pyruvate synthase subunit beta [KO:K00170] [EC:1.2.7.1]
SULA_2871  pyruvate synthase [KO:K00170] [EC:1.2.7.1]
SULA_2205  3-methyl-2-oxobutanoate dehydrogenase subunit beta [KO:K00170] [EC:1.2.7.1]
SULA_2208  pyruvate synthase [KO:K00172] [EC:1.2.7.1]
SULA_0561  pyruvate synthase [KO:K00172] [EC:1.2.7.1]
SULA_0560  4Fe-4S dicluster domain-containing protein [KO:K00171] [EC:1.2.7.1]
SULA_2869  4Fe-4S dicluster domain-containing protein [KO:K00171] [EC:1.2.7.1]
SULA_2207  4Fe-4S dicluster domain-containing protein [KO:K00171] [EC:1.2.7.1]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
ssoa00010  Glycolysis / Gluconeogenesis
ssoa00053  Ascorbate and aldarate metabolism
ssoa00061  Fatty acid biosynthesis
ssoa00071  Fatty acid degradation
ssoa00190  Oxidative phosphorylation
ssoa00220  Arginine biosynthesis
ssoa00250  Alanine, aspartate and glutamate metabolism
ssoa00280  Valine, leucine and isoleucine degradation
ssoa00350  Tyrosine metabolism
ssoa00470  D-Amino acid metabolism
ssoa00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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