KEGG   PATHWAY: sstn00630
Entry
sstn00630                   Pathway                                
Name
Glyoxylate and dicarboxylate metabolism - Solanum stenotomum
Class
Metabolism; Carbohydrate metabolism
Pathway map
sstn00630  Glyoxylate and dicarboxylate metabolism
sstn00630

Module
sstn_M00012  Glyoxylate cycle [PATH:sstn00630]
sstn_M00532  Photorespiration [PATH:sstn00630]
sstn_M00621  Glycine cleavage system [PATH:sstn00630]
Other DBs
GO: 0046487 0043648
Organism
Solanum stenotomum [GN:sstn]
Gene
125875564  isocitrate lyase [KO:K01637] [EC:4.1.3.1 4.1.3.30]
125877786  acetyl-coenzyme A synthetase, chloroplastic/glyoxysomal-like [KO:K01895] [EC:6.2.1.1]
125846812  acetyl-coenzyme A synthetase, chloroplastic/glyoxysomal-like isoform X1 [KO:K01895] [EC:6.2.1.1]
125863218  acetate--CoA ligase CCL3-like [KO:K01913] [EC:6.2.1.1 6.2.1.2]
125870802  acetate--CoA ligase CCL3-like [KO:K01913] [EC:6.2.1.1 6.2.1.2]
125860941  malate synthase, glyoxysomal-like isoform X1 [KO:K01638] [EC:2.3.3.9]
125860942  malate synthase, glyoxysomal [KO:K01638] [EC:2.3.3.9]
125871537  malate dehydrogenase [KO:K00025] [EC:1.1.1.37]
125845142  malate dehydrogenase, cytoplasmic-like isoform X1 [KO:K00025] [EC:1.1.1.37]
125876908  malate dehydrogenase 1, mitochondrial [KO:K00026] [EC:1.1.1.37]
125852011  malate dehydrogenase, glyoxysomal [KO:K00026] [EC:1.1.1.37]
125853573  malate dehydrogenase, glyoxysomal [KO:K00026] [EC:1.1.1.37]
125869035  malate dehydrogenase, mitochondrial [KO:K00026] [EC:1.1.1.37]
125870677  malate dehydrogenase, chloroplastic-like [KO:K00026] [EC:1.1.1.37]
125857623  malate dehydrogenase, chloroplastic [KO:K00026] [EC:1.1.1.37]
125876594  citrate synthase 3, peroxisomal-like [KO:K01647] [EC:2.3.3.1]
125878489  citrate synthase, mitochondrial [KO:K01647] [EC:2.3.3.1]
125868043  citrate synthase, glyoxysomal-like [KO:K01647] [EC:2.3.3.1]
125876851  aconitate hydratase, cytoplasmic [KO:K01681] [EC:4.2.1.3]
125861229  aconitate hydratase, cytoplasmic [KO:K01681] [EC:4.2.1.3]
125877013  acetyl-CoA acetyltransferase, cytosolic 1-like [KO:K00626] [EC:2.3.1.9]
125867885  acetyl-CoA acetyltransferase, cytosolic 1 [KO:K00626] [EC:2.3.1.9]
125855605  acetyl-CoA acetyltransferase, cytosolic 1 [KO:K00626] [EC:2.3.1.9]
125875555  glycolate oxidase 1 [KO:K11517] [EC:1.1.3.15]
125865802  glycolate oxidase 1-like [KO:K11517] [EC:1.1.3.15]
125857672  peroxisomal (S)-2-hydroxyacid oxidase GLO3-like [KO:K11517] [EC:1.1.3.15]
125842473  glycolate oxidase 1-like [KO:K11517] [EC:1.1.3.15]
125858158  peroxisomal (S)-2-hydroxyacid oxidase GLO4-like [KO:K11517] [EC:1.1.3.15]
125858160  peroxisomal (S)-2-hydroxyacid oxidase GLO4-like [KO:K11517] [EC:1.1.3.15]
125858161  peroxisomal (S)-2-hydroxyacid oxidase GLO4-like [KO:K11517] [EC:1.1.3.15]
125863053  catalase isozyme 2 [KO:K03781] [EC:1.11.1.6]
125854435  catalase isozyme 3 [KO:K03781] [EC:1.11.1.6]
125846792  catalase isozyme 2 [KO:K03781] [EC:1.11.1.6]
125841260  glyoxylate/hydroxypyruvate reductase HPR3-like [KO:K15919] [EC:1.1.1.79 1.1.1.81]
125841261  LOW QUALITY PROTEIN: glyoxylate/hydroxypyruvate reductase HPR3-like [KO:K15919] [EC:1.1.1.79 1.1.1.81]
125862867  LOW QUALITY PROTEIN: glyoxylate/hydroxypyruvate reductase HPR3 [KO:K15919] [EC:1.1.1.79 1.1.1.81]
125871923  glyoxylate/succinic semialdehyde reductase 1 [KO:K18121] [EC:1.1.1.79 1.1.1.-]
125860951  LOW QUALITY PROTEIN: glyoxylate/succinic semialdehyde reductase 2, chloroplastic [KO:K18121] [EC:1.1.1.79 1.1.1.-]
125877921  glycerate dehydrogenase [KO:K15893] [EC:1.1.1.29]
125856641  phosphoglycolate phosphatase 2 [KO:K19269] [EC:3.1.3.18 3.1.3.48]
125845229  phosphoglycolate phosphatase 1A, chloroplastic-like [KO:K19269] [EC:3.1.3.18 3.1.3.48]
39717233  rbcL; ribulose-1,5-bisphosphate carboxylase/oxygenase large subunit [KO:K01601] [EC:4.1.1.39]
125848338  ribulose bisphosphate carboxylase small subunit, chloroplastic 6 [KO:K01602] [EC:4.1.1.39]
125877802  ribulose bisphosphate carboxylase small subunit, chloroplastic 3-like [KO:K01602] [EC:4.1.1.39]
125859406  ribulose bisphosphate carboxylase small subunit, chloroplastic 2 [KO:K01602] [EC:4.1.1.39]
125846863  ribulose bisphosphate carboxylase small subunit, chloroplastic 4 isoform X1 [KO:K01602] [EC:4.1.1.39]
125870792  serine--glyoxylate aminotransferase [KO:K00830] [EC:2.6.1.44 2.6.1.45 2.6.1.51]
125867774  glutamate--glyoxylate aminotransferase 2 [KO:K14272] [EC:2.6.1.4 2.6.1.2 2.6.1.44]
125841717  glutamate--glyoxylate aminotransferase 2-like [KO:K14272] [EC:2.6.1.4 2.6.1.2 2.6.1.44]
125857428  ferredoxin-dependent glutamate synthase, chloroplastic-like [KO:K00284] [EC:1.4.7.1]
125869118  glutamine synthetase-like isoform X1 [KO:K01915] [EC:6.3.1.2]
125869798  glutamine synthetase, chloroplastic [KO:K01915] [EC:6.3.1.2]
125856916  glutamine synthetase cytosolic isozyme 1-1 [KO:K01915] [EC:6.3.1.2]
125844018  glutamine synthetase [KO:K01915] [EC:6.3.1.2]
125861286  glutamine synthetase cytosolic isozyme-like [KO:K01915] [EC:6.3.1.2]
125862588  serine hydroxymethyltransferase 4-like [KO:K00600] [EC:2.1.2.1]
125866154  serine hydroxymethyltransferase 7-like [KO:K00600] [EC:2.1.2.1]
125866631  serine hydroxymethyltransferase 4 [KO:K00600] [EC:2.1.2.1]
125855348  serine hydroxymethyltransferase, mitochondrial-like [KO:K00600] [EC:2.1.2.1]
125841158  serine hydroxymethyltransferase 3, chloroplastic-like [KO:K00600] [EC:2.1.2.1]
125846354  serine hydroxymethyltransferase, mitochondrial [KO:K00600] [EC:2.1.2.1]
125862396  serine hydroxymethyltransferase 3, chloroplastic-like [KO:K00600] [EC:2.1.2.1]
125878526  glycine dehydrogenase (decarboxylating), mitochondrial [KO:K00281] [EC:1.4.4.2]
125846562  aminomethyltransferase, mitochondrial [KO:K00605] [EC:2.1.2.10]
125863255  dihydrolipoyl dehydrogenase, mitochondrial-like [KO:K00382] [EC:1.8.1.4]
125851148  dihydrolipoyl dehydrogenase 2, chloroplastic-like [KO:K00382] [EC:1.8.1.4]
125866627  dihydrolipoyl dehydrogenase 1, mitochondrial [KO:K00382] [EC:1.8.1.4]
125869160  dihydrolipoyl dehydrogenase 1, chloroplastic-like isoform X1 [KO:K00382] [EC:1.8.1.4]
125849188  glycine cleavage system H protein 2, mitochondrial [KO:K02437]
125842558  glycine cleavage system H protein, mitochondrial-like [KO:K02437]
125875089  glycine cleavage system H protein, mitochondrial-like [KO:K02437]
125859790  D-glycerate 3-kinase, chloroplastic [KO:K15918] [EC:2.7.1.31]
125847816  formate dehydrogenase, mitochondrial isoform X1 [KO:K00122] [EC:1.17.1.9]
125841888  formyltetrahydrofolate deformylase 2, mitochondrial [KO:K01433] [EC:3.5.1.10]
125872969  formyltetrahydrofolate deformylase 1, mitochondrial-like [KO:K01433] [EC:3.5.1.10]
125848378  uncharacterized protein LOC125848378 [KO:K01455] [EC:3.5.1.49]
125858038  oxalate--CoA ligase-like [KO:K22133] [EC:6.2.1.8]
125874605  probable CoA ligase CCL9 [KO:K22133] [EC:6.2.1.8]
Compound
C00007  Oxygen
C00011  CO2
C00014  Ammonia
C00022  Pyruvate
C00024  Acetyl-CoA
C00025  L-Glutamate
C00026  2-Oxoglutarate
C00027  Hydrogen peroxide
C00033  Acetate
C00036  Oxaloacetate
C00037  Glycine
C00042  Succinate
C00048  Glyoxylate
C00058  Formate
C00064  L-Glutamine
C00065  L-Serine
C00091  Succinyl-CoA
C00100  Propanoyl-CoA
C00111  Glycerone phosphate
C00136  Butanoyl-CoA
C00149  (S)-Malate
C00158  Citrate
C00160  Glycolate
C00168  Hydroxypyruvate
C00197  3-Phospho-D-glycerate
C00209  Oxalate
C00258  D-Glycerate
C00266  Glycolaldehyde
C00311  Isocitrate
C00313  Oxalyl-CoA
C00332  Acetoacetyl-CoA
C00417  cis-Aconitate
C00552  meso-Tartaric acid
C00631  2-Phospho-D-glycerate
C00683  (S)-Methylmalonyl-CoA
C00798  Formyl-CoA
C00877  Crotonoyl-CoA
C00888  Pentanoyl-CoA
C00898  (R,R)-Tartaric acid
C00975  Dihydroxyfumarate
C00988  2-Phosphoglycolate
C01127  4-Hydroxy-2-oxoglutarate
C01146  2-Hydroxy-3-oxopropanoate
C01182  D-Ribulose 1,5-bisphosphate
C01213  (R)-Methylmalonyl-CoA
C01380  Ethylene glycol
C01732  Mesaconate
C01989  3-Ethylmalate
C01990  3-Oxalomalate
C02123  3-Propylmalate
C02405  Formyl phosphate
C03217  2-Hydroxy-3-oxoadipate
C03459  2-Hydroxy-3-oxosuccinate
C03548  trans-2,3-Epoxysuccinate
C03561  (R)-3-Hydroxybutanoyl-CoA
C03618  L-threo-3-Methylaspartate
C04348  L-Malyl-CoA
C06027  L-erythro-3-Methylmalyl-CoA
C06028  2-Methylfumaryl-CoA
C06049  N-Formylderivatives
C18026  (2S)-Ethylmalonyl-CoA
C18324  (2S)-Methylsuccinyl-CoA
C20238  (2R)-Ethylmalonyl-CoA
C22337  D-Ribulose 1-phosphate
Reference
PMID:10978349
  Authors
Njau RK, Herndon CA, Hawes JW.
  Title
Novel beta-hydroxyacid dehydrogenases in Escherichia coli and Haemophilus influenzae.
  Journal
J Biol Chem 275:38780-6 (2000)
DOI:10.1074/jbc.M007432200
Reference
PMID:18065535
  Authors
Zarzycki J, Schlichting A, Strychalsky N, Muller M, Alber BE, Fuchs G
  Title
Mesaconyl-coenzyme A hydratase, a new enzyme of two central carbon metabolic pathways in bacteria.
  Journal
J Bacteriol 190:1366-74 (2008)
DOI:10.1128/JB.01621-07
Reference
PMID:18819910
  Authors
Erb TJ, Retey J, Fuchs G, Alber BE
  Title
Ethylmalonyl-CoA mutase from Rhodobacter sphaeroides defines a new subclade of coenzyme B12-dependent acyl-CoA mutases.
  Journal
J Biol Chem 283:32283-93 (2008)
DOI:10.1074/jbc.M805527200
Reference
PMID:9596633
  Authors
Coschigano KT, Melo-Oliveira R, Lim J, Coruzzi GM
  Title
Arabidopsis gls mutants and distinct Fd-GOGAT genes. Implications for photorespiration and primary nitrogen assimilation.
  Journal
Plant Cell 10:741-52 (1998)
DOI:10.1105/tpc.10.5.741
Reference
PMID:16407450
  Authors
Masclaux-Daubresse C, Reisdorf-Cren M, Pageau K, Lelandais M, Grandjean O, Kronenberger J, Valadier MH, Feraud M, Jouglet T, Suzuki A
  Title
Glutamine synthetase-glutamate synthase pathway and glutamate dehydrogenase play distinct roles in the sink-source nitrogen cycle in tobacco.
  Journal
Plant Physiol 140:444-56 (2006)
DOI:10.1104/pp.105.071910
Reference
PMID:21252347
  Authors
Khomyakova M, Bukmez O, Thomas LK, Erb TJ, Berg IA
  Title
A methylaspartate cycle in haloarchaea.
  Journal
Science 331:334-7 (2011)
DOI:10.1126/science.1196544
Reference
PMID:11513957
  Authors
Serrano JA, Bonete MJ
  Title
Sequencing, phylogenetic and transcriptional analysis of the glyoxylate bypass operon (ace) in the halophilic archaeon Haloferax volcanii.
  Journal
Biochim Biophys Acta 1520:154-62 (2001)
DOI:10.1016/S0167-4781(01)00263-9
Related
pathway
sstn00010  Glycolysis / Gluconeogenesis
sstn00020  Citrate cycle (TCA cycle)
sstn00030  Pentose phosphate pathway
sstn00053  Ascorbate and aldarate metabolism
sstn00071  Fatty acid degradation
sstn00230  Purine metabolism
sstn00250  Alanine, aspartate and glutamate metabolism
sstn00260  Glycine, serine and threonine metabolism
sstn00620  Pyruvate metabolism
sstn00710  Carbon fixation by Calvin cycle
sstn00750  Vitamin B6 metabolism
sstn00910  Nitrogen metabolism
KO pathway
ko00630   
LinkDB

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