KEGG   PATHWAY: sted00020
Entry
sted00020                   Pathway                                
Name
Citrate cycle (TCA cycle) - Sporomusa termitida
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
sted00020  Citrate cycle (TCA cycle)
sted00020

Module
sted_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:sted00020]
sted_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:sted00020]
Other DBs
GO: 0006099
Organism
Sporomusa termitida [GN:sted]
Gene
SPTER_40100  lpd; Dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
SPTER_04260  korA_2; 2-oxoglutarate oxidoreductase subunit KorA [KO:K00174] [EC:1.2.7.3 1.2.7.11]
SPTER_04820  korA_3; 2-oxoglutarate oxidoreductase subunit KorA [KO:K00174] [EC:1.2.7.3 1.2.7.11]
SPTER_19590  korA_4; 2-oxoglutarate oxidoreductase subunit KorA [KO:K00174] [EC:1.2.7.3 1.2.7.11]
SPTER_13520  padG_2; NADH-dependent phenylglyoxylate dehydrogenase subunit alpha [KO:K00174] [EC:1.2.7.3 1.2.7.11]
SPTER_02080  korA_1; 2-oxoglutarate oxidoreductase subunit KorA [KO:K00174] [EC:1.2.7.3 1.2.7.11]
SPTER_12870  padG_1; NADH-dependent phenylglyoxylate dehydrogenase subunit alpha [KO:K00174] [EC:1.2.7.3 1.2.7.11]
SPTER_29280  korA_5; 2-oxoglutarate oxidoreductase subunit KorA [KO:K00174] [EC:1.2.7.3 1.2.7.11]
SPTER_41180  korA_7; 2-oxoglutarate oxidoreductase subunit KorA [KO:K00174] [EC:1.2.7.3 1.2.7.11]
SPTER_38580  korA_6; 2-oxoglutarate oxidoreductase subunit KorA [KO:K00174] [EC:1.2.7.3 1.2.7.11]
SPTER_04270  2-oxoacid:acceptor oxidoreductase, beta subunit, pyruvate/2-ketoisovalerate family [KO:K00175] [EC:1.2.7.3 1.2.7.11]
SPTER_04830  2-oxoacid:acceptor oxidoreductase, beta subunit, pyruvate/2-ketoisovalerate family [KO:K00175] [EC:1.2.7.3 1.2.7.11]
SPTER_19580  korB_4; 2-oxoglutarate oxidoreductase subunit KorB [KO:K00175] [EC:1.2.7.3 1.2.7.11]
SPTER_13530  korB_3; 2-oxoglutarate oxidoreductase subunit KorB [KO:K00175] [EC:1.2.7.3 1.2.7.11]
SPTER_02090  korB_1; 2-oxoglutarate oxidoreductase subunit KorB [KO:K00175] [EC:1.2.7.3 1.2.7.11]
SPTER_12880  korB_2; 2-oxoglutarate oxidoreductase subunit KorB [KO:K00175] [EC:1.2.7.3 1.2.7.11]
SPTER_29270  2-oxoacid:acceptor oxidoreductase, beta subunit, pyruvate/2-ketoisovalerate family [KO:K00175] [EC:1.2.7.3 1.2.7.11]
SPTER_41170  2-oxoacid:acceptor oxidoreductase, beta subunit, pyruvate/2-ketoisovalerate family [KO:K00175] [EC:1.2.7.3 1.2.7.11]
SPTER_38570  korB_5; 2-oxoglutarate oxidoreductase subunit KorB [KO:K00175] [EC:1.2.7.3 1.2.7.11]
SPTER_04280  padE_1; NADH-dependent phenylglyoxylate dehydrogenase subunit gamma [KO:K00177] [EC:1.2.7.3]
SPTER_04840  2-oxoacid:acceptor oxidoreductase, alpha subunit [KO:K00177] [EC:1.2.7.3]
SPTER_19570  2-oxoacid:acceptor oxidoreductase, gamma subunit, pyruvate/2-ketoisovalerate family [KO:K00177] [EC:1.2.7.3]
SPTER_13540  2-oxoacid:acceptor oxidoreductase, gamma subunit, pyruvate/2-ketoisovalerate family [KO:K00177] [EC:1.2.7.3]
SPTER_02100  2-oxoacid:acceptor oxidoreductase, alpha subunit [KO:K00177] [EC:1.2.7.3]
SPTER_12890  2-oxoacid:acceptor oxidoreductase, alpha subunit [KO:K00177] [EC:1.2.7.3]
SPTER_29260  2-oxoacid:acceptor oxidoreductase, alpha subunit [KO:K00177] [EC:1.2.7.3]
SPTER_38560  2-oxoacid:acceptor oxidoreductase, gamma subunit, pyruvate/2-ketoisovalerate family [KO:K00177] [EC:1.2.7.3]
SPTER_04250  4Fe-4S binding domain protein [KO:K00176] [EC:1.2.7.3]
SPTER_04810  4Fe-4S dicluSPTER domain protein [KO:K00176] [EC:1.2.7.3]
SPTER_19600  ndhI_4; NAD(P)H-quinone oxidoreductase subunit I, chloroplastic [KO:K00176] [EC:1.2.7.3]
SPTER_13550  ndhI_3; NAD(P)H-quinone oxidoreductase subunit I, chloroplastic [KO:K00176] [EC:1.2.7.3]
SPTER_02070  2-oxoacid:acceptor oxidoreductase, delta subunit, pyruvate/2-ketoisovalerate family [KO:K00176] [EC:1.2.7.3]
SPTER_12860  ndhI_2; NAD(P)H-quinone oxidoreductase subunit I, chloroplastic [KO:K00176] [EC:1.2.7.3]
SPTER_29290  ndhI_5; NAD(P)H-quinone oxidoreductase subunit I, chloroplastic [KO:K00176] [EC:1.2.7.3]
SPTER_38590  ndhI_6; NAD(P)H-quinone oxidoreductase subunit I, chloroplastic [KO:K00176] [EC:1.2.7.3]
SPTER_29240  sucD; Succinate--CoA ligase [ADP-forming] subunit alpha [KO:K01902] [EC:6.2.1.5]
SPTER_29250  sucC; Succinate--CoA ligase [GDP-forming] subunit beta [KO:K01903] [EC:6.2.1.5]
SPTER_14110  cat1; Succinyl-CoA:coenzyme A transferase [KO:K18118] [EC:2.8.3.18]
SPTER_31640  frdB; Fumarate reductase iron-sulfur subunit [KO:K00240] [EC:1.3.5.1]
SPTER_36750  sdhE_2; 8-methylmenaquinol:fumarate reductase membrane anchor subunit [KO:K00241]
SPTER_10760  ttdA; L(+)-tartrate dehydratase subunit alpha [KO:K01677] [EC:4.2.1.2]
SPTER_10770  fumB; Fumarate hydratase class I, anaerobic [KO:K01678] [EC:4.2.1.2]
SPTER_09370  purK; N5-carboxyaminoimidazole ribonucleotide synthase [KO:K01958] [EC:6.4.1.1]
SPTER_25100  pckA; Phosphoenolpyruvate carboxykinase (ATP) [KO:K01610] [EC:4.1.1.49]
SPTER_30130  pdhC; Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase complex [KO:K00627] [EC:2.3.1.12]
SPTER_31750  porA; Pyruvate synthase subunit PorA [KO:K00169] [EC:1.2.7.1]
SPTER_09440  Oxalate oxidoreductase subunit alpha [KO:K00169] [EC:1.2.7.1]
SPTER_09450  Oxalate oxidoreductase subunit beta [KO:K00170] [EC:1.2.7.1]
SPTER_31740  padI; NADH-dependent phenylglyoxylate dehydrogenase subunit beta [KO:K00170] [EC:1.2.7.1]
SPTER_31770  padE_2; NADH-dependent phenylglyoxylate dehydrogenase subunit gamma [KO:K00172] [EC:1.2.7.1]
SPTER_09420  Oxalate oxidoreductase subunit delta [KO:K00172] [EC:1.2.7.1]
SPTER_09430  Oxalate oxidoreductase subunit delta [KO:K00171] [EC:1.2.7.1]
SPTER_31760  2-oxoacid:acceptor oxidoreductase, delta subunit, pyruvate/2-ketoisovalerate family [KO:K00171] [EC:1.2.7.1]
SPTER_12790  por_1; Pyruvate synthase [KO:K03737] [EC:1.2.7.1 1.2.7.-]
SPTER_34120  por_3; Pyruvate synthase [KO:K03737] [EC:1.2.7.1 1.2.7.-]
SPTER_31840  por_2; Pyruvate synthase [KO:K03737] [EC:1.2.7.1 1.2.7.-]
SPTER_49470  por_4; Pyruvate synthase [KO:K03737] [EC:1.2.7.1 1.2.7.-]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
sted00010  Glycolysis / Gluconeogenesis
sted00061  Fatty acid biosynthesis
sted00071  Fatty acid degradation
sted00190  Oxidative phosphorylation
sted00220  Arginine biosynthesis
sted00250  Alanine, aspartate and glutamate metabolism
sted00280  Valine, leucine and isoleucine degradation
sted00350  Tyrosine metabolism
sted00470  D-Amino acid metabolism
sted00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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