KEGG   PATHWAY: ster03430
Entry
ster03430                   Pathway                                
Name
Mismatch repair - Sphingopyxis terrae
Description
DNA mismatch repair (MMR) is a highly conserved biological pathway that plays a key role in maintaining genomic stability. MMR corrects DNA mismatches generated during DNA replication, thereby preventing mutations from becoming permanent in dividing cells. MMR also suppresses homologous recombination and was recently shown to play a role in DNA damage signaling. Defects in MMR are associated with genome-wide instability, predisposition to certain types of cancer including HNPCC, resistance to certain chemotherapeutic agents, and abnormalities in meiosis and sterility in mammalian systems.
The Escherichia coli MMR pathway has been extensively studied and is well characterized. In E. coli, the mismatch-activated MutS-MutL-ATP complex licenses MutH to incise the nearest unmethylated GATC sequence. UvrD and an exonuclease generate a gap. This gap is filled by pol III and DNA ligase. The GATC sites are then methylated by Dam. Several human MMR proteins have been identified based on their homology to E. coli MMR proteins. These include human homologs of MutS and MutL. Although E. coli MutS and MutL proteins are homodimers, human MutS and MutL homologs are heterodimers. The role of hemimethylated dGATC sites as a signal for strand discrimination is not conserved from E. coli to human. Human MMR is presumed to be nick-directed in vivo, and is thought to discriminate daughter and template strands using a strand-specific nick.
Class
Genetic Information Processing; Replication and repair
Pathway map
ster03430  Mismatch repair
ster03430

Other DBs
GO: 0006298
Organism
Sphingopyxis terrae [GN:ster]
Gene
AOA14_07770  DNA mismatch repair protein MutS [KO:K03555]
AOA14_16835  DNA mismatch repair protein MutL [KO:K03572]
AOA14_15100  DNA helicase II [KO:K03657] [EC:5.6.2.4]
AOA14_10280  exodeoxyribonuclease VII large subunit [KO:K03601] [EC:3.1.11.6]
AOA14_02815  exodeoxyribonuclease VII small subunit [KO:K03602] [EC:3.1.11.6]
AOA14_07465  single-stranded-DNA-specific exonuclease RecJ [KO:K07462] [EC:3.1.-.-]
AOA14_07085  single-stranded DNA-binding protein [KO:K03111]
AOA14_18445  single-stranded DNA-binding protein [KO:K03111]
AOA14_18950  single-stranded DNA-binding protein [KO:K03111]
AOA14_16810  DNA polymerase III subunit alpha [KO:K02337] [EC:2.7.7.7]
AOA14_12560  DNA polymerase III subunit beta [KO:K02338] [EC:2.7.7.7]
AOA14_14190  DNA polymerase III subunit gamma/tau [KO:K02343] [EC:2.7.7.7]
AOA14_09315  DNA polymerase III subunit delta [KO:K02340] [EC:2.7.7.7]
AOA14_15525  DNA-directed DNA polymerase [KO:K02341] [EC:2.7.7.7]
AOA14_04615  DNA polymerase III subunit epsilon [KO:K02342] [EC:2.7.7.7]
AOA14_08005  DNA polymerase III subunit epsilon [KO:K02342] [EC:2.7.7.7]
AOA14_11220  DNA polymerase III subunit epsilon [KO:K02342] [EC:2.7.7.7]
AOA14_03685  DNA polymerase III subunit epsilon [KO:K02342] [EC:2.7.7.7]
AOA14_17880  DNA polymerase III subunit chi [KO:K02339] [EC:2.7.7.7]
AOA14_05490  aromatic ring-opening dioxygenase LigA [KO:K01972] [EC:6.5.1.2]
Reference
  Authors
Jiricny J.
  Title
The multifaceted mismatch-repair system.
  Journal
Nat Rev Mol Cell Biol 7:335-46 (2006)
DOI:10.1038/nrm1907
Reference
  Authors
Li GM.
  Title
Mechanisms and functions of DNA mismatch repair.
  Journal
Cell Res 18:85-98 (2008)
DOI:10.1038/cr.2007.115
Reference
  Authors
Marti TM, Kunz C, Fleck O.
  Title
DNA mismatch repair and mutation avoidance pathways.
  Journal
J Cell Physiol 191:28-41 (2002)
DOI:10.1002/jcp.10077
Reference
  Authors
Ikejima M, Shimada T.
  Title
[Molecular mechanism of mismatch repair]
  Journal
Tanpakushitsu Kakusan Koso 46:1124-9 (2001)
KO pathway
ko03430   
LinkDB

DBGET integrated database retrieval system