KEGG   PATHWAY: sua00020
Entry
sua00020                    Pathway                                
Name
Citrate cycle (TCA cycle) - Sulfurimonas autotrophica
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
sua00020  Citrate cycle (TCA cycle)
sua00020

Module
sua_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:sua00020]
sua_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:sua00020]
sua_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:sua00020]
Other DBs
GO: 0006099
Organism
Sulfurimonas autotrophica [GN:sua]
Gene
Saut_1577  ATP-citrate lyase/succinyl-CoA ligase [KO:K15230] [EC:2.3.3.8]
Saut_1578  ATP citrate lyase subunit 1 [KO:K15231] [EC:2.3.3.8]
Saut_1107  aconitase [KO:K01682] [EC:4.2.1.3 4.2.1.99]
Saut_1113  isocitrate dehydrogenase, NADP-dependent [KO:K00031] [EC:1.1.1.42]
Saut_0554  pyridine nucleotide-disulfide oxidoreductase dimerization region [KO:K00382] [EC:1.8.1.4]
Saut_0486  FAD-dependent pyridine nucleotide-disulfide oxidoreductase [KO:K00382] [EC:1.8.1.4]
Saut_1119  2-oxoglutarate ferredoxin oxidoreductase, alpha subunit [KO:K00174] [EC:1.2.7.3 1.2.7.11]
Saut_1120  2-oxoglutarate ferredoxin oxidoreductase, beta subunit [KO:K00175] [EC:1.2.7.3 1.2.7.11]
Saut_1121  2-oxoglutarate ferredoxin oxidoreductase, gamma subunit [KO:K00177] [EC:1.2.7.3]
Saut_1118  2-oxoglutarate ferredoxin oxidoreductase, delta subunit [KO:K00176] [EC:1.2.7.3]
Saut_1117  succinyl-CoA synthetase (ADP-forming) alpha subunit [KO:K01902] [EC:6.2.1.5]
Saut_1116  succinyl-CoA synthetase (ADP-forming) beta subunit [KO:K01903] [EC:6.2.1.5]
Saut_1256  succinate dehydrogenase subunit A [KO:K00239] [EC:1.3.5.1]
Saut_1257  succinate dehydrogenase subunit B [KO:K00240] [EC:1.3.5.1]
Saut_1258  succinate dehydrogenase subunit C [KO:K00241]
Saut_1115  fumarase [KO:K01679] [EC:4.2.1.2]
Saut_1114  malate dehydrogenase (NAD) [KO:K00024] [EC:1.1.1.37]
Saut_1402  Carbamoyl-phosphate synthase L chain ATP-binding protein [KO:K01959] [EC:6.4.1.1]
Saut_1375  Pyruvate carboxylase [KO:K01960] [EC:6.4.1.1]
Saut_0553  phosphoenolpyruvate carboxykinase (ATP) [KO:K01610] [EC:4.1.1.49]
Saut_0557  pyruvate dehydrogenase (acetyl-transferring) E1 component, alpha subunit [KO:K00161] [EC:1.2.4.1]
Saut_0483  Pyruvate dehydrogenase (acetyl-transferring) [KO:K00161] [EC:1.2.4.1]
Saut_0558  Transketolase central region [KO:K00162] [EC:1.2.4.1]
Saut_0484  Transketolase central region [KO:K00162] [EC:1.2.4.1]
Saut_0559  catalytic domain of components of various dehydrogenase complexes [KO:K00627] [EC:2.3.1.12]
Saut_0485  catalytic domain of components of various dehydrogenase complexes [KO:K00627] [EC:2.3.1.12]
Saut_1940  pyruvate flavodoxin/ferredoxin oxidoreductase domain protein [KO:K00169] [EC:1.2.7.1]
Saut_1939  thiamine pyrophosphate protein domain protein TPP-binding protein [KO:K00170] [EC:1.2.7.1]
Saut_1941  pyruvate ferredoxin/flavodoxin oxidoreductase, delta subunit [KO:K00171] [EC:1.2.7.1]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
sua00010  Glycolysis / Gluconeogenesis
sua00061  Fatty acid biosynthesis
sua00071  Fatty acid degradation
sua00190  Oxidative phosphorylation
sua00220  Arginine biosynthesis
sua00250  Alanine, aspartate and glutamate metabolism
sua00280  Valine, leucine and isoleucine degradation
sua00350  Tyrosine metabolism
sua00470  D-Amino acid metabolism
sua00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

DBGET integrated database retrieval system