KEGG   PATHWAY: sulg00020
Entry
sulg00020                   Pathway                                
Name
Citrate cycle (TCA cycle) - Sulfurimonas lithotrophica
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
sulg00020  Citrate cycle (TCA cycle)
sulg00020

Module
sulg_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:sulg00020]
sulg_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:sulg00020]
sulg_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:sulg00020]
sulg_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:sulg00020]
Other DBs
GO: 0006099
Organism
Sulfurimonas lithotrophica [GN:sulg]
Gene
FJR48_00025  citrate synthase [KO:K01647] [EC:2.3.3.1]
FJR48_02400  ATP citrate synthase [KO:K15230] [EC:2.3.3.8]
FJR48_02395  ATPase [KO:K15231] [EC:2.3.3.8]
FJR48_06070  bifunctional aconitate hydratase 2/2-methylisocitrate dehydratase [KO:K01682] [EC:4.2.1.3 4.2.1.99]
FJR48_06015  NADP-dependent isocitrate dehydrogenase [KO:K00031] [EC:1.1.1.42]
FJR48_05985  2-oxoglutarate synthase subunit alpha [KO:K00174] [EC:1.2.7.3 1.2.7.11]
FJR48_05980  2-oxoglutarate ferredoxin oxidoreductase subunit beta [KO:K00175] [EC:1.2.7.3 1.2.7.11]
FJR48_05975  oorC; 2-oxoglutarate:acceptor oxidoreductase [KO:K00177] [EC:1.2.7.3]
FJR48_05990  4Fe-4S dicluster domain-containing protein [KO:K00176] [EC:1.2.7.3]
FJR48_05995  sucD; succinate--CoA ligase subunit alpha [KO:K01902] [EC:6.2.1.5]
FJR48_06000  sucC; ADP-forming succinate--CoA ligase subunit beta [KO:K01903] [EC:6.2.1.5]
FJR48_05570  sdhA; succinate dehydrogenase flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
FJR48_05565  sdhB; succinate dehydrogenase iron-sulfur subunit [KO:K00240] [EC:1.3.5.1]
FJR48_05560  heterodisulfide reductase subunit B [KO:K00241]
FJR48_07330  fumarate reductase flavoprotein subunit [KO:K00233] [EC:1.3.5.1 7.1.1.12]
FJR48_07325  fumarate reductase iron-sulfur subunit [KO:K25995] [EC:1.3.5.1 7.1.1.12]
FJR48_07335  fumarate reductase cytochrome b subunit [KO:K25996]
FJR48_06005  fumC; class II fumarate hydratase [KO:K01679] [EC:4.2.1.2]
FJR48_06010  mdh; malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
FJR48_07515  FAD-dependent oxidoreductase [KO:K00116] [EC:1.1.5.4]
FJR48_03305  acetyl-CoA carboxylase biotin carboxylase subunit [KO:K01959] [EC:6.4.1.1]
FJR48_06910  biotin attachment protein [KO:K01960] [EC:6.4.1.1]
FJR48_11965  pckA; phosphoenolpyruvate carboxykinase (ATP) [KO:K01610] [EC:4.1.1.49]
FJR48_12060  pckA; phosphoenolpyruvate carboxykinase (ATP) [KO:K01610] [EC:4.1.1.49]
FJR48_11210  2-oxoacid:ferredoxin oxidoreductase subunit alpha [KO:K00169] [EC:1.2.7.1]
FJR48_11205  pyruvate ferredoxin oxidoreductase [KO:K00170] [EC:1.2.7.1]
FJR48_11215  4Fe-4S dicluster domain-containing protein [KO:K00171] [EC:1.2.7.1]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
sulg00010  Glycolysis / Gluconeogenesis
sulg00061  Fatty acid biosynthesis
sulg00071  Fatty acid degradation
sulg00190  Oxidative phosphorylation
sulg00220  Arginine biosynthesis
sulg00250  Alanine, aspartate and glutamate metabolism
sulg00280  Valine, leucine and isoleucine degradation
sulg00350  Tyrosine metabolism
sulg00470  D-Amino acid metabolism
sulg00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

DBGET integrated database retrieval system