KEGG   PATHWAY: suln00020
Entry
suln00020                   Pathway                                
Name
Citrate cycle (TCA cycle) - Sulfurimonas xiamenensis
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
suln00020  Citrate cycle (TCA cycle)
suln00020

Module
suln_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:suln00020]
suln_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:suln00020]
suln_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:suln00020]
Other DBs
GO: 0006099
Organism
Sulfurimonas xiamenensis [GN:suln]
Gene
FJR47_02470  ATP citrate synthase [KO:K15230] [EC:2.3.3.8]
FJR47_02465  ATPase [KO:K15231] [EC:2.3.3.8]
FJR47_04860  acnB; bifunctional aconitate hydratase 2/2-methylisocitrate dehydratase [KO:K01682] [EC:4.2.1.3 4.2.1.99]
FJR47_04890  NADP-dependent isocitrate dehydrogenase [KO:K00031] [EC:1.1.1.42]
FJR47_05270  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
FJR47_04920  2-oxoglutarate synthase subunit alpha [KO:K00174] [EC:1.2.7.3 1.2.7.11]
FJR47_04925  2-oxoglutarate ferredoxin oxidoreductase subunit beta [KO:K00175] [EC:1.2.7.3 1.2.7.11]
FJR47_04930  oorC; 2-oxoglutarate:acceptor oxidoreductase [KO:K00177] [EC:1.2.7.3]
FJR47_04915  4Fe-4S dicluster domain-containing protein [KO:K00176] [EC:1.2.7.3]
FJR47_04910  sucD; succinate--CoA ligase subunit alpha [KO:K01902] [EC:6.2.1.5]
FJR47_04905  sucC; ADP-forming succinate--CoA ligase subunit beta [KO:K01903] [EC:6.2.1.5]
FJR47_05465  sdhA; succinate dehydrogenase flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
FJR47_00165  FAD-dependent oxidoreductase [KO:K00239] [EC:1.3.5.1]
FJR47_05470  sdhB; succinate dehydrogenase iron-sulfur subunit [KO:K00240] [EC:1.3.5.1]
FJR47_05475  heterodisulfide reductase subunit B [KO:K00241]
FJR47_04900  fumC; class II fumarate hydratase [KO:K01679] [EC:4.2.1.2]
FJR47_04895  mdh; malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
FJR47_05800  biotin attachment protein [KO:K01960] [EC:6.4.1.1]
FJR47_07860  pckA; phosphoenolpyruvate carboxykinase (ATP) [KO:K01610] [EC:4.1.1.49]
FJR47_05300  pdhA; pyruvate dehydrogenase (acetyl-transferring) E1 component subunit alpha [KO:K00161] [EC:1.2.4.1]
FJR47_05295  alpha-ketoacid dehydrogenase subunit beta [KO:K00162] [EC:1.2.4.1]
FJR47_05290  2-oxo acid dehydrogenase subunit E2 [KO:K00627] [EC:2.3.1.12]
FJR47_08895  2-oxoacid:ferredoxin oxidoreductase subunit alpha [KO:K00169] [EC:1.2.7.1]
FJR47_08890  pyruvate ferredoxin oxidoreductase [KO:K00170] [EC:1.2.7.1]
FJR47_08900  4Fe-4S dicluster domain-containing protein [KO:K00171] [EC:1.2.7.1]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
suln00010  Glycolysis / Gluconeogenesis
suln00053  Ascorbate and aldarate metabolism
suln00061  Fatty acid biosynthesis
suln00071  Fatty acid degradation
suln00190  Oxidative phosphorylation
suln00220  Arginine biosynthesis
suln00250  Alanine, aspartate and glutamate metabolism
suln00280  Valine, leucine and isoleucine degradation
suln00350  Tyrosine metabolism
suln00470  D-Amino acid metabolism
suln00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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